Factsheet for VIT_06s0009g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89766	Soybean	nucleus	49.62	49.9
KRH18640	Soybean	nucleus	50.57	49.63
PGSC0003DMT400015156	Potato	nucleus	46.76	48.8
Solyc06g073640.2.1	Tomato	nucleus	46.76	48.61
VIT_13s0067g01630.t01	Wine grape	nucleus	50.95	47.76
PGSC0003DMT400058426	Potato	nucleus	44.85	44.93
Solyc01g009070.2.1	Tomato	nucleus	43.32	42.27
PGSC0003DMT400070549	Potato	nucleus	36.45	39.38
CDY38535	Canola	nucleus	32.25	39.12
CDX83247	Canola	nucleus	32.06	38.62
Bra000531.1-P	Field mustard	nucleus	31.87	38.39
AT2G26960.1	Thale cress	nucleus	30.15	37.0
HORVU7Hr1G105450.1	Barley	nucleus	22.52	35.54
Solyc11g072060.1.1	Tomato	nucleus	34.54	33.52
Zm00001d033075_P001	Maize	nucleus	23.66	33.33
TraesCS4A01G467100.1	Wheat	nucleus	17.37	32.16
VIT_12s0059g00700.t01	Wine grape	nucleus	25.95	31.92
HORVU7Hr1G105520.2	Barley	nucleus	23.66	31.79
TraesCS7B01G357900.1	Wheat	nucleus	24.05	31.5
TraesCS7D01G446700.1	Wheat	nucleus	24.05	31.5
TraesCS7D01G130100.1	Wheat	nucleus	25.19	30.99
HORVU7Hr1G027370.1	Barley	nucleus	25.19	30.91
TraesCS7B01G031000.1	Wheat	nucleus	24.62	30.57
HORVU6Hr1G026450.1	Barley	nucleus	23.28	30.5
TraesCS6D01G126900.1	Wheat	nucleus	23.09	30.33
EER90224	Sorghum	nucleus	24.62	30.14
AT2G26950.1	Thale cress	cytosol	21.95	30.1
VIT_15s0021g02040.t01	Wine grape	nucleus	17.56	29.77
Zm00001d013801_P001	Maize	nucleus	25.95	29.63
Zm00001d014364_P002	Maize	nucleus	22.71	29.6
VIT_19s0090g00590.t01	Wine grape	nucleus	25.57	28.88
CDX71481	Canola	nucleus	31.11	28.6
KXG38121	Sorghum	nucleus	24.81	28.45
Os06t0679400-01	Rice	nucleus	23.66	27.74
Os03t0578900-00	Rice	nucleus	23.66	23.48
Zm00001d036577_P001	Maize	nucleus	22.14	22.7

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246221	wikigene:100246221	MapMan:15.5.2.1	EMBL:AM469349	ProteinID:CAN63791
ProteinID:CAN63791.1	ProteinID:CCB49102	ProteinID:CCB49102.1	UniProt:F6HAD1	EMBL:FN595504	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100246221	wikigene:LOC100246221	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF540	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00019836BF	ArrayExpress:VIT_06s0009g02480	EnsemblPlantsGene:VIT_06s0009g02480	EnsemblPlants:VIT_06s0009g02480.t01	unigene:Vvi.15869
RefSeq:XP_002266116	RefSeq:XP_002266116.1	RefSeq:XP_010651548.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:15016037..15020552

Molecular Weight (calculated)

57501.7 Da

IEP (calculated)

4.634

GRAVY (calculated)

-0.665

Length

524 amino acids

Sequence
(BLAST)

001: MAGDQEGSPL GEEEVGSGGK SGGGGGGPLK KGPWTSAEDA VLIDYVTKHG EGNWNAVMKH SGLSRCGKSC RLRWANHLRP DLKKGAFTPE EEHRIIELHA
101: RMGNKWARMA AELPGRTDNE IKNYWNTRIK RLQRAGLPIY PPDVSMKALN GSQQSQSMGS LTTGEASPSD LLQGNSFEIP AVQFKNLQNP GIYPYPPTYF
201: DILPSGSLTQ NLGSSDGQNF MFPAMHPPKR FRESETFFSG LNDDFSNAFP ALDLYDDTCD NNPYYLYDDT CEKNPQPFEW SSSYDPDLST NLTSLGGLPG
301: SHALSNGNFS SEPISGAMKV ELPSLQYSEA QVGNWGSLFP MPSIESVDTL IQSPQTEQIQ VDCLSPSKSG LLEAVVYESR NLKRKYDSCH QASNTAIECN
401: DVVGNLPLNP YEAEWNVYVD PTSPLGNSAA SVFNVHTPIS GSSPDEPQSI ETLLGCKVHP EPVNQIATHY DGKKETPNQM DLSRPDRLLD ADWFGPDTER
501: GREQATWRDA LNALLGEDIN SNKK

Best Arabidopsis Sequence Match ( AT5G06100.4 )
(BLAST)

001: MSYTSTDSDH NESPAADDNG SDCRSRWDGH ALKKGPWSSA EDDILIDYVN KHGEGNWNAV QKHTSLFRCG KSCRLRWANH LRPNLKKGAF SQEEEQLIVE
101: LHAKMGNRWA RMAAHLPGRT DNEIKNYWNT RIKRRQRAGL PLYPPEMHVE ALEWSQEYAK SRVMGEDRRH QDFLQLGSCE SNVFFDTLNF TDMVPGTFDL
201: ADMTAYKNMG NCASSPRYEN FMTPTIPSSK RLWESELLYP GCSSTIKQEF SSPEQFRNTS PQTISKTCSF SVPCDVEHPL YGNRHSPVMI PDSHTPTDGI
301: VPYSKPLYGA VKLELPSFQY SETTFDQWKK SSSPPHSDLL DPFDTYIQSP PPPTGGEESD LYSNFDTGLL DMLLLEAKIR NNSTKNNLYR SCASTIPSAD
401: LGQVTVSQTK SEEFDNSLKS FLVHSEMSTQ NADETPPRQR EKKRKPLLDI TRPDVLLASS WLDHGLGIVK ETGSMSDALA VLLGDDIGND YMNMSVGASS
501: GVGSCSWSNM PPVCQMTELP

Arabidopsis Description

MYB33Transcription factor MYB33 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.