Factsheet for VIT_12s0059g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g00590.t01	Wine grape	nucleus	36.38	33.41
Bra021791.1-P	Field mustard	nucleus	29.34	32.22
HORVU7Hr1G105450.1	Barley	nucleus	24.18	31.02
CDY15321	Canola	nucleus	31.22	29.69
CDY19141	Canola	nucleus	30.75	29.5
Zm00001d033075_P001	Maize	nucleus	25.59	29.3
CDY66700	Canola	nucleus	30.05	28.83
PGSC0003DMT400036086	Potato	nucleus	31.69	28.36
PGSC0003DMT400074486	Potato	nucleus	32.16	28.31
CDY68663	Canola	nucleus	29.81	27.79
Bra022888.1-P	Field mustard	nucleus	29.58	27.57
CDY48264	Canola	nucleus	30.99	27.56
Bra005597.1-P	Field mustard	nucleus	30.99	27.56
CDY12203	Canola	nucleus	30.99	27.44
Solyc07g052300.2.1	Tomato	nucleus	31.22	27.37
HORVU7Hr1G105520.2	Barley	nucleus	24.88	27.18
AT2G32460.1	Thale cress	nucleus	31.22	27.14
KRH26778	Soybean	nucleus	30.28	27.04
KRH22574	Soybean	nucleus	30.28	26.93
TraesCS6D01G126900.1	Wheat	nucleus	25.12	26.82
TraesCS7B01G031000.1	Wheat	nucleus	26.53	26.78
VIT_13s0067g01630.t01	Wine grape	nucleus	34.98	26.65
HORVU6Hr1G026450.1	Barley	nucleus	24.88	26.5
TraesCS7B01G357900.1	Wheat	nucleus	24.88	26.5
HORVU7Hr1G027370.1	Barley	nucleus	26.53	26.46
TraesCS7D01G130100.1	Wheat	nucleus	26.29	26.29
TraesCS7D01G446700.1	Wheat	nucleus	24.65	26.25
VIT_06s0009g02480.t01	Wine grape	nucleus	31.92	25.95
TraesCS4A01G467100.1	Wheat	nucleus	16.43	24.73
KXG38121	Sorghum	nucleus	26.29	24.51
Zm00001d013801_P001	Maize	nucleus	26.29	24.4
EER90224	Sorghum	nucleus	24.41	24.3
Zm00001d014364_P002	Maize	nucleus	22.77	24.13
VIT_15s0021g02040.t01	Wine grape	nucleus	17.37	23.95
Os06t0679400-01	Rice	nucleus	23.94	22.82
Os03t0578900-00	Rice	nucleus	26.53	21.4
Solyc12g005890.1.1	Tomato	nucleus	19.95	20.99
Zm00001d036577_P001	Maize	nucleus	23.24	19.37

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100253438	wikigene:100253438	MapMan:15.5.2.1	ProteinID:CBI28806	ProteinID:CBI28806.3
ncoils:Coil	UniProt:D7TE83	EMBL:FN595765	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100253438	wikigene:LOC100253438	InterPro:Myb_dom	PFAM:PF00249
InterPro:PG/BPGM_mutase_AS	ScanProsite:PS00175	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF916	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CAAD9	ArrayExpress:VIT_12s0059g00700	EnsemblPlantsGene:VIT_12s0059g00700	EnsemblPlants:VIT_12s0059g00700.t01
RefSeq:XP_002268969	RefSeq:XP_002268969.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:5528282..5529743

Molecular Weight (calculated)

46017.5 Da

IEP (calculated)

8.330

GRAVY (calculated)

-0.608

Length

426 amino acids

Sequence
(BLAST)

001: MISNSGGGGA LSDDATSGMG GNGGANQGLK KGPWTTAEDA VLVEYVKRHG EGNWNSVQKN SGLSRCGKSC RLRWANHLRP NLKKGAFSPE EERLIVELHA
101: KLGNKWARMA AQLPGRTDNE IKNYWNTRVK RRQRAGLPLY PQGVQKEALH QQQQQPVLSH SSSSMFSPFL SSPQQTKPSF NPTLSLFDQV NFTTSANPIS
201: SHANSSFLSN PSSQFKFFPN NNAGYTMPLS PVSPFQSSMS SLYNHSLTPS QLLSQSPVQF NSGSFDGSFN LNQPIVGSQF HPIVAVPGMN LKLPASPSPL
301: QQTTSASSGA TGDDYMISQS TTANTYVVAQ PLSQDTSGLL DDMLKEAETL SRNENSKEEN CVVQFGNAQA EDNSMAASNK GKHVLDGIVQ NGAGQHMWSA
401: YGNRQATPEN QWADSCAAQA HAGEFM

Best Arabidopsis Sequence Match ( AT2G32460.1 )
(BLAST)

001: MDGGGETTAT ATMEGRGLKK GPWTTTEDAI LTEYVRKHGE GNWNAVQKNS GLLRCGKSCR LRWANHLRPN LKKGSFTPDE EKIIIDLHAK LGNKWARMAS
101: QLPGRTDNEI KNYWNTRMKR RQRAGLPLYP HEIQHQGIDI DDEFEFDLTS FQFQNQDLDH NHQNMIQYTN SSNTSSSSSS FSSSSSQPSK RLRPDPLVST
201: NPGLNPIPDS SMDFQMFSLY NNSLENDNNQ FGFSVPLSSS SSSNEVCNPN HILEYISENS DTRNTNKKDI DAMSYSSLLM GDLEIRSSSF PLGLDNSVLE
301: LPSNQRPTHS FSSSPIIDNG VHLEPPSGNS GLLDALLEES QALSRGGLFK DVRVSSSDLC EVQDKRVKMD FENLLIDHLN SSNHSSLGAN PNIHNKYNEP
401: TMVKVTVDDD DELLTSLLNN FPSTTTPLPD WYRVTEMQNE ASYLAPPSGI LMGNHQGNGR VEPPTVPPSS SVDPMASLGS CYWSNMPSIC

Arabidopsis Description

MYB101Transcription factor MYB101 [Source:UniProtKB/Swiss-Prot;Acc:O80883]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.