Factsheet for VIT_15s0021g02040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G051740.1	Barley	nucleus	32.04	60.0
KRH48761	Soybean	nucleus	57.28	57.1
KRH66578	Soybean	nucleus	57.28	56.91
Os06t0118150-00	Rice	nucleus	17.8	55.0
PGSC0003DMT400066066	Potato	nucleus	54.37	54.9
Solyc10g019260.1.1	Tomato	nucleus	53.72	54.61
AT3G60460.1	Thale cress	nucleus	52.75	54.33
CDX71809	Canola	nucleus	47.57	54.04
Bra003413.1-P	Field mustard	nucleus	50.16	53.26
Bra007536.1-P	Field mustard	nucleus	46.28	53.16
Solyc01g090530.1.1	Tomato	nucleus	54.69	52.98
CDY41164	Canola	nucleus	46.28	52.57
CDY64759	Canola	nucleus	51.46	52.13
CDX67827	Canola	nucleus	51.13	51.97
Zm00001d031515_P001	Maize	nucleus	38.51	40.48
EES15365	Sorghum	nucleus	39.81	39.81
TraesCS2B01G434400.1	Wheat	nucleus	42.39	39.58
TraesCS2D01G412500.1	Wheat	nucleus	42.39	39.46
TraesCS2A01G415400.1	Wheat	nucleus	42.07	39.16
Zm00001d002750_P001	Maize	nucleus	41.75	37.5
Zm00001d026186_P001	Maize	nucleus	40.78	36.42
GSMUA_Achr1P01660_001	Banana	nucleus	37.54	36.02
EES11224	Sorghum	nucleus	41.75	34.13
TraesCS7A01G251700.1	Wheat	nucleus	37.86	32.77
TraesCS7B01G139400.1	Wheat	nucleus	37.54	32.68
VIT_06s0009g02480.t01	Wine grape	nucleus	29.77	17.56
VIT_12s0059g00700.t01	Wine grape	nucleus	23.95	17.37
VIT_13s0067g01630.t01	Wine grape	nucleus	31.07	17.17
VIT_19s0090g00590.t01	Wine grape	nucleus	24.6	16.38

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256500	wikigene:100256500	MapMan:15.5.2.1	ProteinID:CBI16634	ProteinID:CBI16634.3
UniProt:D7SLV6	EMBL:FN594952	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100256500	wikigene:LOC100256500	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF488	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015C9A87	ArrayExpress:VIT_15s0021g02040
EnsemblPlantsGene:VIT_15s0021g02040	EnsemblPlants:VIT_15s0021g02040.t01	RefSeq:XP_002273472	RefSeq:XP_002273472.1	SEG:seg	:

Description

No Description!

Coordinates

chr15:+:12773481..12774819

Molecular Weight (calculated)

35342.4 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.775

Length

309 amino acids

Sequence
(BLAST)

001: MEGEREEIKK GPWKAEEDEV LINHVNKYGP RDWSSIRSKG LLQRTGKSCR LRWVNKLRPN LKNGCKFSSE EERLVIELQA QFGNKWARIA TYLPGRTDND
101: VKNFWSSRQK RLARILQTPS SSPSSSQSHK NPGEVPFLHD FPTLEVPNFS ASMEEDLSSK SSYIDNSEMI KLVGLPDMVE PNLPALETNL FQLQFNHADQ
201: KTPCMESQSQ FPFPHLPQPQ PALTLSPESQ ELVARLDDPN FFDVFGDRDV SQELGNGAQF PVEPTFFELE SCKSCGKRKE NPMTPDSFFD DFPTDMFDHM
301: EPLPSPSEW

Best Arabidopsis Sequence Match ( AT3G60460.1 )
(BLAST)

001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP

Arabidopsis Description

DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.