Factsheet for VIT_13s0067g01630.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P21550_001	Banana	nucleus	16.1	68.18
CDY69320	Canola	nucleus	21.82	60.1
KRH20589	Soybean	nucleus	57.25	60.04
KRH13249	Soybean	nucleus	56.89	59.66
CDY72198	Canola	nucleus	21.65	59.61
KRH56248	Soybean	nucleus	51.7	56.23
KRH62709	Soybean	nucleus	51.16	56.08
GSMUA_Achr10P...	Banana	nucleus	36.85	53.37
VIT_06s0009g02480.t01	Wine grape	nucleus	47.76	50.95
GSMUA_Achr1P17150_001	Banana	nucleus	52.59	50.17
GSMUA_AchrUn_...	Banana	nucleus	48.3	47.2
AT5G06100.4	Thale cress	nucleus	43.11	46.35
CDY56849	Canola	nucleus	39.18	43.54
CDY08526	Canola	nucleus	39.0	43.43
Bra002042.1-P	Field mustard	nucleus	35.6	42.34
Bra034842.1-P	Field mustard	nucleus	39.0	42.17
AT3G11440.1	Thale cress	nucleus	41.68	42.13
CDY66041	Canola	nucleus	35.42	41.16
GSMUA_Achr7P21560_001	Banana	nucleus	30.95	39.68
HORVU7Hr1G105450.1	Barley	nucleus	21.47	36.14
Zm00001d033075_P001	Maize	nucleus	23.61	35.48
VIT_12s0059g00700.t01	Wine grape	nucleus	26.65	34.98
HORVU7Hr1G027370.1	Barley	nucleus	26.48	34.66
TraesCS4A01G467100.1	Wheat	nucleus	17.35	34.28
VIT_19s0090g00590.t01	Wine grape	nucleus	27.91	33.62
HORVU6Hr1G026450.1	Barley	nucleus	23.43	32.75
TraesCS7B01G031000.1	Wheat	nucleus	24.69	32.7
TraesCS7D01G130100.1	Wheat	nucleus	24.87	32.63
HORVU7Hr1G105520.2	Barley	nucleus	22.72	32.56
Zm00001d013801_P001	Maize	nucleus	26.48	32.24
TraesCS6D01G126900.1	Wheat	nucleus	22.9	32.08
KXG38121	Sorghum	nucleus	26.12	31.95
TraesCS7D01G446700.1	Wheat	nucleus	22.54	31.5
TraesCS7B01G357900.1	Wheat	nucleus	22.36	31.25
VIT_15s0021g02040.t01	Wine grape	nucleus	17.17	31.07
GSMUA_Achr7P02510_001	Banana	nucleus	30.95	30.84
Zm00001d014364_P002	Maize	nucleus	22.0	30.6
EER90224	Sorghum	nucleus	22.9	29.91
Os06t0679400-01	Rice	nucleus	22.9	28.64
Os03t0578900-00	Rice	nucleus	22.54	23.86
Zm00001d036577_P001	Maize	nucleus	21.29	23.29

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100248959	wikigene:100248959	MapMan:15.5.2.1	EMBL:AM456085	ProteinID:CAN78897
ProteinID:CAN78897.1	ProteinID:CBI40642	ProteinID:CBI40642.3	UniProt:D7UD27	EMBL:FN596756	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100248959	wikigene:LOC100248959	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF938	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC58746	UniParc:UPI0001984887	ArrayExpress:VIT_13s0067g01630	EnsemblPlantsGene:VIT_13s0067g01630	EnsemblPlants:VIT_13s0067g01630.t01
unigene:Vvi.11506	RefSeq:XP_002275846	RefSeq:XP_002275846.1	RefSeq:XP_010645528.1	RefSeq:XP_010645530.1	RefSeq:XP_010645531.1
RefSeq:XP_019073249.1	RefSeq:XP_019073250.1	RefSeq:XP_019073251.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13_random:-:914710..922589

Molecular Weight (calculated)

60786.0 Da

IEP (calculated)

4.853

GRAVY (calculated)

-0.561

Length

559 amino acids

Sequence
(BLAST)

001: MSHLTNESED GMLSKDQTGS PLIDEGNSSG SAGGGIVLKK GPWTSSEDAI LVEYVKKHGE GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTAEE
101: ERLIIELHAK MGNKWARMAA HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCFQALQE SQQIQNTGGI NGGDKVHHDL LQTNSYEIPD VILDGFKANQ
201: DAFPYVPDFP NLSTSSMLMK GFGSSQYCGF MAPTMHRQKR VRESPALFPG YNERNGIPLF DQIQDDTGDK IAQSFGLPYP FDPDPTNKDP LPFAGMQGSH
301: ALLNGNFSAS KPISGPVKLE LPSLQYLETD LGGWGTSSSP PPLLESVDAF IQSPPSGTVQ LECLSPRNSG LLDALLHEAK TISSGKNHLS DKSANSSTVT
401: PGDLADSCLN MCETEWEDYG DPISPLGHST TSIFSECTPI SASGSSLDEH PPSETFPGCN VKAEPVDQVW TPDGEKETST QLDFSRPDVL LGSNWIDQST
501: GGPKDQAMMN DAVASLFSDD FGNNYKNMAS GTPTSNQGWG LGCCAWNNLP PVCQMSELP

Best Arabidopsis Sequence Match ( AT5G06100.4 )
(BLAST)

001: MSYTSTDSDH NESPAADDNG SDCRSRWDGH ALKKGPWSSA EDDILIDYVN KHGEGNWNAV QKHTSLFRCG KSCRLRWANH LRPNLKKGAF SQEEEQLIVE
101: LHAKMGNRWA RMAAHLPGRT DNEIKNYWNT RIKRRQRAGL PLYPPEMHVE ALEWSQEYAK SRVMGEDRRH QDFLQLGSCE SNVFFDTLNF TDMVPGTFDL
201: ADMTAYKNMG NCASSPRYEN FMTPTIPSSK RLWESELLYP GCSSTIKQEF SSPEQFRNTS PQTISKTCSF SVPCDVEHPL YGNRHSPVMI PDSHTPTDGI
301: VPYSKPLYGA VKLELPSFQY SETTFDQWKK SSSPPHSDLL DPFDTYIQSP PPPTGGEESD LYSNFDTGLL DMLLLEAKIR NNSTKNNLYR SCASTIPSAD
401: LGQVTVSQTK SEEFDNSLKS FLVHSEMSTQ NADETPPRQR EKKRKPLLDI TRPDVLLASS WLDHGLGIVK ETGSMSDALA VLLGDDIGND YMNMSVGASS
501: GVGSCSWSNM PPVCQMTELP

Arabidopsis Description

MYB33Transcription factor MYB33 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.