Factsheet for GSMUA_Achr7P21550_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69320	Canola	nucleus	52.27	33.99
CDY72198	Canola	nucleus	52.27	33.99
GSMUA_Achr10P...	Banana	nucleus	56.06	19.17
GSMUA_Achr4P23690_001	Banana	nucleus	50.76	18.21
TraesCS4A01G467100.1	Wheat	nucleus	36.36	16.96
VIT_13s0067g01630.t01	Wine grape	nucleus	68.18	16.1
GSMUA_Achr7P00280_001	Banana	nucleus	37.88	15.34
GSMUA_Achr1P01660_001	Banana	nucleus	37.12	15.22
KRH62709	Soybean	nucleus	58.33	15.1
GSMUA_AchrUn_...	Banana	nucleus	65.15	15.04
KRH56248	Soybean	nucleus	57.58	14.79
Bra002042.1-P	Field mustard	nucleus	52.27	14.68
KRH20589	Soybean	nucleus	59.09	14.63
AT5G06100.4	Thale cress	nucleus	56.82	14.42
CDY66041	Canola	nucleus	52.27	14.35
KRH13249	Soybean	nucleus	57.58	14.26
CDY08526	Canola	nucleus	53.79	14.14
CDY56849	Canola	nucleus	53.79	14.12
GSMUA_Achr1P17150_001	Banana	nucleus	62.12	13.99
Bra034842.1-P	Field mustard	nucleus	53.79	13.73
AT3G11440.1	Thale cress	nucleus	55.3	13.2
GSMUA_Achr7P02510_001	Banana	nucleus	48.48	11.41
GSMUA_Achr2P13930_001	Banana	nucleus	27.27	10.94
GSMUA_Achr4P27730_001	Banana	nucleus	23.48	8.73
GSMUA_Achr7P21560_001	Banana	nucleus	2.27	0.69

Protein Annotations

EnsemblPlants:GSMUA_Achr7P21550_001	EnsemblPlants:GSMUA_Achr7T21550_001	EnsemblPlantsGene:GSMUA_Achr7G21550_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF475	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000295E281	UniProt:M0TJJ1	MapMan:15.5.2.1	:	:	:

Description

Transcription factor GAMYB [Source:GMGC_GENE;Acc:GSMUA_Achr7G21550_001]

Coordinates

chr7:+:24292621..24293019

Molecular Weight (calculated)

14898.9 Da

IEP (calculated)

9.169

GRAVY (calculated)

-0.604

Length

132 amino acids

Sequence
(BLAST)

001: MNLLPTKSEK EPIAEDNIFS HSIDEGSREK SIGKDGQVLK KGPWTSAEDA ILVEYVKKHG EGNWNAVQKN SGLFRCGKSC RLRWANHLKP NLKKGAFSME
101: EEEMIVQLHA KIGNKWAKMA TFVSELSSYH LI

Best Arabidopsis Sequence Match ( AT5G06100.1 )
(BLAST)

001: MSYTSTDSDH NESPAADDNG SDCRSRWDGH ALKKGPWSSA EDDILIDYVN KHGEGNWNAV QKHTSLFRCG KSCRLRWANH LRPNLKKGAF SQEEEQLIVE
101: LHAKMGNRWA RMAAHLPGRT DNEIKNYWNT RIKRRQRAGL PLYPPEMHVE ALEWSQEYAK SRVMGEDRRH QDFLQLGSCE SNVFFDTLNF TDMVPGTFDL
201: ADMTAYKNMG NCASSPRYEN FMTPTIPSSK RLWESELLYP GCSSTIKQEF SSPEQFRNTS PQTISKTCSF SVPCDVEHPL YGNRHSPVMI PDSHTPTDGI
301: VPYSKPLYGA VKLELPSFQY SETTFDQWKK SSSPPHSDLL DPFDTYIQSP PPPTGGEESD LYSNFDTGLL DMLLLEAKIR NNSTKNNLYR SCASTIPSAD
401: LGQVTVSQTK SEEFDNSLKS FLVHSEMSTQ NADETPPSEL LFTLPSLEIV C

Arabidopsis Description

MYB33Transcription factor MYB33 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.