Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY72198 | Canola | nucleus | 30.56 | 83.25 |
CDY69320 | Canola | nucleus | 30.38 | 82.76 |
CDY56849 | Canola | nucleus | 73.96 | 81.31 |
CDY08526 | Canola | nucleus | 73.6 | 81.08 |
Bra034842.1-P | Field mustard | nucleus | 74.32 | 79.5 |
Bra002042.1-P | Field mustard | nucleus | 66.18 | 77.87 |
CDY66041 | Canola | nucleus | 66.37 | 76.3 |
GSMUA_Achr7P21550_001 | Banana | nucleus | 13.2 | 55.3 |
AT5G06100.4 | Thale cress | nucleus | 47.02 | 50.0 |
GSMUA_Achr10P... | Banana | nucleus | 29.11 | 41.71 |
VIT_13s0067g01630.t01 | Wine grape | nucleus | 42.13 | 41.68 |
KRH20589 | Soybean | nucleus | 39.78 | 41.28 |
KRH13249 | Soybean | nucleus | 39.24 | 40.71 |
KRH56248 | Soybean | nucleus | 35.62 | 38.33 |
KRH62709 | Soybean | nucleus | 34.72 | 37.65 |
GSMUA_Achr1P17150_001 | Banana | nucleus | 37.61 | 35.49 |
GSMUA_AchrUn_... | Banana | nucleus | 35.99 | 34.79 |
Zm00001d033075_P001 | Maize | nucleus | 22.78 | 33.87 |
HORVU7Hr1G105450.1 | Barley | nucleus | 19.89 | 33.13 |
TraesCS4A01G467100.1 | Wheat | nucleus | 16.09 | 31.45 |
HORVU7Hr1G027370.1 | Barley | nucleus | 24.05 | 31.15 |
AT2G32460.1 | Thale cress | nucleus | 27.49 | 31.02 |
AT4G26930.1 | Thale cress | nucleus | 21.7 | 30.85 |
KXG38121 | Sorghum | nucleus | 25.32 | 30.63 |
TraesCS7D01G130100.1 | Wheat | nucleus | 23.51 | 30.52 |
TraesCS7B01G031000.1 | Wheat | nucleus | 23.15 | 30.33 |
HORVU7Hr1G105520.2 | Barley | nucleus | 21.34 | 30.26 |
TraesCS7D01G446700.1 | Wheat | nucleus | 21.34 | 29.5 |
TraesCS7B01G357900.1 | Wheat | nucleus | 21.34 | 29.5 |
Zm00001d014364_P002 | Maize | nucleus | 21.16 | 29.1 |
Zm00001d013801_P001 | Maize | nucleus | 24.05 | 28.98 |
AT2G26960.1 | Thale cress | nucleus | 22.24 | 28.81 |
HORVU6Hr1G026450.1 | Barley | nucleus | 20.8 | 28.75 |
EER90224 | Sorghum | nucleus | 22.06 | 28.5 |
TraesCS6D01G126900.1 | Wheat | nucleus | 20.43 | 28.32 |
GSMUA_Achr7P02510_001 | Banana | nucleus | 27.12 | 26.74 |
Os06t0679400-01 | Rice | nucleus | 20.98 | 25.95 |
GSMUA_Achr7P21560_001 | Banana | nucleus | 20.43 | 25.92 |
AT2G26950.1 | Thale cress | cytosol | 17.72 | 25.65 |
AT5G55020.1 | Thale cress | nucleus | 23.33 | 24.67 |
AT3G60460.1 | Thale cress | nucleus | 13.2 | 24.33 |
Os03t0578900-00 | Rice | nucleus | 21.88 | 22.92 |
Zm00001d036577_P001 | Maize | nucleus | 20.07 | 21.72 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:820317 | UniProt:A0A178VKX5 | ProteinID:AAG43496.1 | ProteinID:AAG51434.1 |
ProteinID:AEE75047.1 | EMBL:AF062899 | ProteinID:ANM65045.1 | ProteinID:ANM65047.1 | ArrayExpress:AT3G11440 | EnsemblPlantsGene:AT3G11440 |
RefSeq:AT3G11440 | TAIR:AT3G11440 | RefSeq:AT3G11440-TAIR-G | EnsemblPlants:AT3G11440.1 | TAIR:AT3G11440.1 | Symbol:ATMYB65 |
EMBL:AY519585 | Unigene:At.43844 | EMBL:BT003940 | EMBL:BT005120 | InterPro:GAMYB-like | GO:GO:0000003 |
GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0008285 | GO:GO:0009058 | GO:GO:0009653 |
GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009740 | GO:GO:0009751 | GO:GO:0009791 | GO:GO:0009908 |
GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0043068 | GO:GO:0043565 |
GO:GO:0044212 | GO:GO:0045893 | GO:GO:0045926 | GO:GO:0048235 | GO:GO:0048653 | GO:GO:0048655 |
GO:GO:1990019 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_001327042.1 | RefSeq:NP_001327044.1 |
RefSeq:NP_187751.1 | ProteinID:OAP06414.1 | PFAM:PF00249 | PIRSF:PIRSF001693 | PO:PO:0000013 | PO:PO:0000037 |
PO:PO:0000191 | PO:PO:0000229 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51294 |
PANTHER:PTHR10641 | PANTHER:PTHR10641:SF938 | UniProt:Q9FR97 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
UniParc:UPI000000C1F2 | EMBL:Z95778 | EMBL:Z95788 | SEG:seg | : | : |
Description
ATMYB65Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5]
Coordinates
chr3:+:3602036..3605172
Molecular Weight (calculated)
61368.6 Da
IEP (calculated)
6.507
GRAVY (calculated)
-0.623
Length
553 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYTTATADS DDGMHSSIHN ESPAPDSISN GCRSRGKRSV LKKGPWTSTE DGILIDYVKK HGEGNWNAVQ KHTSLARCGK SCRLRWANHL RPNLKKGAFS
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS AFAGNVVKTE ELDQVWEPKR VDITRPDVLL ASSWLDQGCY
501: GIVSDTSSMS DALALLGGDD IGNSYVTVGS SSGQAPRGVG SYGWTNMPPV WSL
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS AFAGNVVKTE ELDQVWEPKR VDITRPDVLL ASSWLDQGCY
501: GIVSDTSSMS DALALLGGDD IGNSYVTVGS SSGQAPRGVG SYGWTNMPPV WSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.