Factsheet for GSMUA_Achr10P29280_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P21550_001	Banana	nucleus	19.17	56.06
CDY72198	Canola	nucleus	27.46	52.22
CDY69320	Canola	nucleus	27.2	51.72
GSMUA_Achr1P17150_001	Banana	nucleus	61.14	40.27
GSMUA_AchrUn_...	Banana	nucleus	55.96	37.76
VIT_13s0067g01630.t01	Wine grape	nucleus	53.37	36.85
GSMUA_Achr7P21560_001	Banana	nucleus	40.93	36.24
KRH13249	Soybean	nucleus	49.74	36.02
GSMUA_Achr4P23690_001	Banana	nucleus	33.94	35.6
KRH62709	Soybean	nucleus	46.89	35.49
KRH20589	Soybean	nucleus	48.96	35.46
KRH56248	Soybean	nucleus	47.15	35.41
GSMUA_Achr7P00280_001	Banana	nucleus	27.72	32.82
Bra002042.1-P	Field mustard	nucleus	38.6	31.7
CDY66041	Canola	nucleus	38.86	31.18
CDY08526	Canola	nucleus	39.9	30.68
CDY56849	Canola	nucleus	39.12	30.02
AT5G06100.4	Thale cress	nucleus	40.16	29.81
GSMUA_Achr2P13930_001	Banana	nucleus	25.39	29.79
Bra034842.1-P	Field mustard	nucleus	39.9	29.79
TraesCS4A01G467100.1	Wheat	nucleus	21.5	29.33
AT3G11440.1	Thale cress	nucleus	41.71	29.11
GSMUA_Achr7P02510_001	Banana	nucleus	41.45	28.52
GSMUA_Achr4P27730_001	Banana	nucleus	23.58	25.63
GSMUA_Achr1P01660_001	Banana	nucleus	17.88	21.43

Protein Annotations

EnsemblPlants:GSMUA_Achr10P29280_001	EnsemblPlants:GSMUA_Achr10T29280_001	EnsemblPlantsGene:GSMUA_Achr10G29280_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF938	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000295333B	UniProt:M0RMF2	MapMan:15.5.2.1	:	:

Description

Putative Transcription factor GAMYB [Source:GMGC_GENE;Acc:GSMUA_Achr10G29280_001]

Coordinates

chr10:-:31868652..31871862

Molecular Weight (calculated)

42669.7 Da

IEP (calculated)

5.091

GRAVY (calculated)

-0.406

Length

386 amino acids

Sequence
(BLAST)

001: MEWDGQVLKK GPWTSAEDAL LVEYVKEHGE GNWNAVQKNS GLSRCGKSCR LRWANHLRPN LKKGAFTPEE EQLIIKLHAK MGNKWAQMAT QFIVCHRDCL
101: SYFVIAVLLP GRTDNEIKNF WNTRIKRLQR AGLPLYPPNV CCQASDGDQQ TQIVSSVTQH QNDILQGNNF NFPDIVFENF DPDHGDLSYA SSFPDISMTF
201: GLDNPYDPDA NIKNLATFGG EISLSHALSN GNFSASRPLP GAWKLELPSL QHAEIDDSSW TAYHSTAHLE AVDTYVESSP TAVSLQSECI SPRSSGLLEV
301: MLHEAQALSN SKRHSSQKSS SSSAITHNEM LESSGLNFFD IGWEDCNDPI SPLGCSAASI FNEFMPPING SSIHEFLPSE STTGAF

Best Arabidopsis Sequence Match ( AT5G06100.1 )
(BLAST)

001: MSYTSTDSDH NESPAADDNG SDCRSRWDGH ALKKGPWSSA EDDILIDYVN KHGEGNWNAV QKHTSLFRCG KSCRLRWANH LRPNLKKGAF SQEEEQLIVE
101: LHAKMGNRWA RMAAHLPGRT DNEIKNYWNT RIKRRQRAGL PLYPPEMHVE ALEWSQEYAK SRVMGEDRRH QDFLQLGSCE SNVFFDTLNF TDMVPGTFDL
201: ADMTAYKNMG NCASSPRYEN FMTPTIPSSK RLWESELLYP GCSSTIKQEF SSPEQFRNTS PQTISKTCSF SVPCDVEHPL YGNRHSPVMI PDSHTPTDGI
301: VPYSKPLYGA VKLELPSFQY SETTFDQWKK SSSPPHSDLL DPFDTYIQSP PPPTGGEESD LYSNFDTGLL DMLLLEAKIR NNSTKNNLYR SCASTIPSAD
401: LGQVTVSQTK SEEFDNSLKS FLVHSEMSTQ NADETPPSEL LFTLPSLEIV C

Arabidopsis Description

MYB33Transcription factor MYB33 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1W6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.