CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08526	Canola	nucleus	97.61	97.81
Bra034842.1-P	Field mustard	nucleus	98.01	95.36
CDY72198	Canola	nucleus	32.21	79.8
CDY69320	Canola	nucleus	32.21	79.8
AT3G11440.1	Thale cress	nucleus	81.31	73.96
CDY66041	Canola	nucleus	67.59	70.69
GSMUA_Achr7P21550_001	Banana	nucleus	14.12	53.79
VIT_13s0067g01630.t01	Wine grape	nucleus	43.54	39.18
GSMUA_Achr10P...	Banana	nucleus	30.02	39.12
KRH20589	Soybean	nucleus	40.76	38.46
KRH13249	Soybean	nucleus	40.16	37.9
KRH56248	Soybean	nucleus	37.38	36.58
KRH62709	Soybean	nucleus	35.98	35.49
Zm00001d033075_P001	Maize	nucleus	25.65	34.68
GSMUA_Achr1P17150_001	Banana	nucleus	38.57	33.11
HORVU7Hr1G105450.1	Barley	nucleus	21.67	32.83
TraesCS7B01G031000.1	Wheat	nucleus	26.84	31.99
HORVU7Hr1G027370.1	Barley	nucleus	27.04	31.85
TraesCS7D01G130100.1	Wheat	nucleus	26.84	31.69
GSMUA_AchrUn_...	Banana	nucleus	35.98	31.64
TraesCS4A01G467100.1	Wheat	nucleus	17.69	31.45
KXG38121	Sorghum	nucleus	28.43	31.29
CDY68663	Canola	nucleus	28.03	30.85
CDY66700	Canola	nucleus	26.44	29.95
HORVU7Hr1G105520.2	Barley	nucleus	23.06	29.74
CDY15321	Canola	nucleus	26.44	29.69
Zm00001d013801_P001	Maize	nucleus	27.04	29.63
CDY19141	Canola	nucleus	26.04	29.5
CDY67258	Canola	nucleus	25.05	29.3
HORVU6Hr1G026450.1	Barley	nucleus	23.26	29.25
CDY38535	Canola	nucleus	25.05	29.17
CDY19890	Canola	nucleus	24.85	29.14
TraesCS7D01G446700.1	Wheat	nucleus	23.06	29.0
TraesCS7B01G357900.1	Wheat	nucleus	23.06	29.0
CDX83247	Canola	nucleus	24.85	28.74
CDY20794	Canola	nucleus	23.26	28.47
Zm00001d014364_P002	Maize	nucleus	22.66	28.36
TraesCS6D01G126900.1	Wheat	nucleus	22.47	28.32
EER90224	Sorghum	nucleus	23.66	27.8
CDY48264	Canola	nucleus	26.44	27.77
CDY12203	Canola	nucleus	26.44	27.65
CDX71809	Canola	nucleus	14.51	26.84
CDY41164	Canola	nucleus	14.31	26.47
Os06t0679400-01	Rice	nucleus	23.26	26.17
CDY64759	Canola	nucleus	15.71	25.9
CDX67827	Canola	nucleus	15.51	25.66
GSMUA_Achr7P02510_001	Banana	nucleus	28.23	25.31
GSMUA_Achr7P21560_001	Banana	nucleus	21.87	25.23
CDY43016	Canola	nucleus	26.44	24.01
CDY61426	Canola	nucleus	26.24	23.7
Os03t0578900-00	Rice	nucleus	24.85	23.67
CDX71481	Canola	nucleus	25.65	22.63
Zm00001d036577_P001	Maize	nucleus	21.87	21.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078J177	UniProt:A0A078J177	EnsemblPlants:CDY56849	ProteinID:CDY56849
ProteinID:CDY56849.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00020136001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF938	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF1AA2	SEG:seg

Description

BnaCnng31260DBnaCnng31260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J177]

Coordinates

chrLK033524:+:13427..15427

Molecular Weight (calculated)

55491.0 Da

IEP (calculated)

5.456

GRAVY (calculated)

-0.580

Length

503 amino acids

Sequence
(BLAST)

001: MSYTAESDDD GMHSPAGDSI GGYGCKSRGK GSVLKKGPWT STEDGILINY VRKHGEGNWN AVQKYTSLAR CGKSCRLRWA NHLRPNLKKG AFSQEEERLI
101: VQMHAKMGNK WAQMAEHLPG RTDNEIKNYW NTRIKRRHRA GLPLYPPELH VEDLQWSEEY TTSNVTRVNR RRHQDILQLG NSKADVLFDD LNFATNLLPG
201: ASDVLDMFTC NMLGTGASSS PYESYMPPIL PSPKQLRDSG SLFPMCSSNI KQEFHSPEPF QNPRSCSISP CDVGHHSPYG NQRPSDVMIS DSHAFTDGML
301: PTSKPLFGAV KLELPSFQYS ETSGFDQWKT TTPSPPHSDP LDSVDAYIQS PPPLEIEEDE SNCFSSCDTG LLDMLLPNAK IKTSAKRSLA LPEIPIPTQL
401: SAGETSPDSA GNVVKTEELD QVWEPKRVDI TRPDVLLGSS WLDQQGCFGI VRDSSNMSDA LALLLGGEDI ENSYVTVGSS SSGQAQQGVG SCTWTNMPPV
501: WSL

Best Arabidopsis Sequence Match ( AT3G11440.3 )
(BLAST)

001: MSYTTATADS DDGMHSSIHN ESPAPDSISN GCRSRGKRSV LKKGPWTSTE DGILIDYVKK HGEGNWNAVQ KHTSLARCGK SCRLRWANHL RPNLKKGAFS
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS AFAGNVVKTE ELDQVWEPKR VDITRPDVLL ASSWLDQGCY
501: GIVSDTSSMS DALALLGGDD IGNSYVTVGS SSGQAPRGVG SYGWTNMPPV WSL

Arabidopsis Description

ATMYB65Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.