CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19141	Canola	nucleus	93.97	94.82
CDY48264	Canola	nucleus	74.55	69.73
CDY12203	Canola	nucleus	74.33	69.23
CDY66700	Canola	nucleus	57.81	58.33
CDY68663	Canola	nucleus	59.38	58.21
AT2G32460.1	Thale cress	nucleus	63.39	57.96
CDY72198	Canola	nucleus	21.43	47.29
CDY69320	Canola	nucleus	21.21	46.8
HORVU7Hr1G105450.1	Barley	nucleus	24.55	33.13
PGSC0003DMT400036086	Potato	nucleus	34.6	32.56
Zm00001d033075_P001	Maize	nucleus	26.56	31.99
KRH22574	Soybean	nucleus	33.48	31.32
VIT_12s0059g00700.t01	Wine grape	nucleus	29.69	31.22
CDY67258	Canola	nucleus	29.91	31.16
CDY19890	Canola	nucleus	29.69	31.0
KRH26778	Soybean	nucleus	32.59	30.61
PGSC0003DMT400074486	Potato	nucleus	32.14	29.75
CDY20794	Canola	nucleus	27.23	29.68
TraesCS4A01G467100.1	Wheat	nucleus	18.75	29.68
Solyc07g052300.2.1	Tomato	nucleus	31.92	29.42
HORVU7Hr1G105520.2	Barley	nucleus	25.45	29.23
TraesCS7B01G031000.1	Wheat	nucleus	27.46	29.15
Zm00001d014364_P002	Maize	nucleus	26.12	29.1
TraesCS7D01G130100.1	Wheat	nucleus	27.46	28.87
HORVU7Hr1G027370.1	Barley	nucleus	27.23	28.57
CDX83247	Canola	nucleus	27.68	28.51
TraesCS7D01G446700.1	Wheat	nucleus	25.22	28.25
KXG38121	Sorghum	nucleus	28.79	28.23
CDY38535	Canola	nucleus	27.01	28.01
TraesCS7B01G357900.1	Wheat	nucleus	25.0	28.0
EER90224	Sorghum	nucleus	26.34	27.57
HORVU6Hr1G026450.1	Barley	nucleus	24.55	27.5
TraesCS6D01G126900.1	Wheat	nucleus	24.33	27.32
Zm00001d013801_P001	Maize	nucleus	27.9	27.23
Solyc12g005890.1.1	Tomato	nucleus	24.33	26.91
Os06t0679400-01	Rice	nucleus	26.79	26.85
CDY66041	Canola	nucleus	28.57	26.61
CDY61426	Canola	nucleus	33.04	26.57
CDY08526	Canola	nucleus	29.69	26.49
CDY56849	Canola	nucleus	29.69	26.44
CDY43016	Canola	nucleus	32.14	25.99
CDY41164	Canola	nucleus	15.4	25.37
CDX71809	Canola	nucleus	15.18	25.0
CDX67827	Canola	nucleus	16.74	24.67
CDY64759	Canola	nucleus	16.74	24.59
Os03t0578900-00	Rice	nucleus	25.45	21.59
CDX71481	Canola	nucleus	27.01	21.23
Zm00001d036577_P001	Maize	nucleus	22.77	19.96

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078FQ77	UniProt:A0A078FQ77	EnsemblPlants:CDY15321	ProteinID:CDY15321
ProteinID:CDY15321.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00085597001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF918	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF088F	SEG:seg

Description

BnaC04g43020DBnaC04g43020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQ77]

Coordinates

chrLK032054:+:16418..18316

Molecular Weight (calculated)

49949.7 Da

IEP (calculated)

5.448

GRAVY (calculated)

-0.784

Length

448 amino acids

Sequence
(BLAST)

001: MDGGGETSTA AKEARGLKKG PWTTTEDAIL TEYVRKRGEG NWNAVQKNSG LLRCGKSCRL RWANHLRPNL RKGSFSPDEE KIIIELHAKL GNKWARMASQ
101: LPGRTDNEIK NYWNTRTKRR QRAGLPLYPH EIQHRGIGND DEFEFSSFQF PNQDHPNHQN LIQYTNSSNN SSSSSSFSSS SSQPPKELCL NPLISTNPGL
201: NQIPNMFSPY NNSFENDNNQ FGFSLPFSSS SSSNELCNPD QLLELMSENL DTNVISKKDI DATSLIRDHE TIPSYFSLGL DTTVLELPSN QTPTQSCTSN
301: IMLDNNVHLD SPAGNSGLLD ALLEESRALS RGGIFRDARV SSSGLCEDQD KRVKMDFENR LIDHLSSSHQ SSFESNSNLY EKHNDATMLK ATVDDDDDDM
401: LKSLLNSFPS TTPLPDWVEP HKPPPSSNVD PMASLGSSSY WGNIPRIC

Best Arabidopsis Sequence Match ( AT2G32460.1 )
(BLAST)

001: MDGGGETTAT ATMEGRGLKK GPWTTTEDAI LTEYVRKHGE GNWNAVQKNS GLLRCGKSCR LRWANHLRPN LKKGSFTPDE EKIIIDLHAK LGNKWARMAS
101: QLPGRTDNEI KNYWNTRMKR RQRAGLPLYP HEIQHQGIDI DDEFEFDLTS FQFQNQDLDH NHQNMIQYTN SSNTSSSSSS FSSSSSQPSK RLRPDPLVST
201: NPGLNPIPDS SMDFQMFSLY NNSLENDNNQ FGFSVPLSSS SSSNEVCNPN HILEYISENS DTRNTNKKDI DAMSYSSLLM GDLEIRSSSF PLGLDNSVLE
301: LPSNQRPTHS FSSSPIIDNG VHLEPPSGNS GLLDALLEES QALSRGGLFK DVRVSSSDLC EVQDKRVKMD FENLLIDHLN SSNHSSLGAN PNIHNKYNEP
401: TMVKVTVDDD DELLTSLLNN FPSTTTPLPD WYRVTEMQNE ASYLAPPSGI LMGNHQGNGR VEPPTVPPSS SVDPMASLGS CYWSNMPSIC

Arabidopsis Description

MYB101Transcription factor MYB101 [Source:UniProtKB/Swiss-Prot;Acc:O80883]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.