Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003413.1-P | Field mustard | nucleus | 95.39 | 99.66 |
| CDY64759 | Canola | nucleus | 96.05 | 95.74 |
| CDX71809 | Canola | nucleus | 73.36 | 81.99 |
| CDY41164 | Canola | nucleus | 72.37 | 80.88 |
| AT3G60460.1 | Thale cress | nucleus | 78.62 | 79.67 |
| HORVU7Hr1G051740.1 | Barley | nucleus | 31.25 | 57.58 |
| VIT_15s0021g02040.t01 | Wine grape | nucleus | 51.97 | 51.13 |
| Os06t0118150-00 | Rice | nucleus | 16.78 | 51.0 |
| KRH48761 | Soybean | nucleus | 49.67 | 48.71 |
| KRH66578 | Soybean | nucleus | 48.68 | 47.59 |
| PGSC0003DMT400066066 | Potato | nucleus | 44.08 | 43.79 |
| Solyc10g019260.1.1 | Tomato | nucleus | 43.42 | 43.42 |
| Solyc01g090530.1.1 | Tomato | nucleus | 44.74 | 42.63 |
| TraesCS2B01G434400.1 | Wheat | nucleus | 40.79 | 37.46 |
| TraesCS2D01G412500.1 | Wheat | nucleus | 40.79 | 37.35 |
| TraesCS2A01G415400.1 | Wheat | nucleus | 40.79 | 37.35 |
| Zm00001d031515_P001 | Maize | nucleus | 35.53 | 36.73 |
| EES15365 | Sorghum | nucleus | 36.51 | 35.92 |
| Zm00001d002750_P001 | Maize | nucleus | 38.49 | 34.01 |
| Zm00001d026186_P001 | Maize | nucleus | 37.17 | 32.66 |
| EES11224 | Sorghum | nucleus | 39.14 | 31.48 |
| GSMUA_Achr1P01660_001 | Banana | nucleus | 33.22 | 31.37 |
| TraesCS7A01G251700.1 | Wheat | nucleus | 35.86 | 30.53 |
| TraesCS7B01G139400.1 | Wheat | nucleus | 35.53 | 30.42 |
| CDY69320 | Canola | nucleus | 20.07 | 30.05 |
| CDY72198 | Canola | nucleus | 20.07 | 30.05 |
| CDY38535 | Canola | nucleus | 25.99 | 18.29 |
| CDX83247 | Canola | nucleus | 25.66 | 17.93 |
| CDY20794 | Canola | nucleus | 24.01 | 17.76 |
| CDY19890 | Canola | nucleus | 24.01 | 17.02 |
| CDY67258 | Canola | nucleus | 24.01 | 16.98 |
| CDY19141 | Canola | nucleus | 24.67 | 16.89 |
| CDY15321 | Canola | nucleus | 24.67 | 16.74 |
| CDY48264 | Canola | nucleus | 25.0 | 15.87 |
| CDY66041 | Canola | nucleus | 25.0 | 15.8 |
| CDY12203 | Canola | nucleus | 25.0 | 15.8 |
| CDY66700 | Canola | nucleus | 22.7 | 15.54 |
| CDY08526 | Canola | nucleus | 25.66 | 15.54 |
| CDY68663 | Canola | nucleus | 23.36 | 15.54 |
| CDY56849 | Canola | nucleus | 25.66 | 15.51 |
| CDY43016 | Canola | nucleus | 25.99 | 14.26 |
| CDY61426 | Canola | nucleus | 25.99 | 14.18 |
| CDX71481 | Canola | nucleus | 24.34 | 12.98 |
Protein Annotations
| EnsemblPlants:CDX67827 | EnsemblPlantsGene:GSBRNA2T00099024001 | Gene3D:1.10.10.60 | GO:A0A078BUD3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF488 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX67827 | ProteinID:CDX67827.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE4088 | MapMan:15.5.2.1 | : |
Description
BnaA07g18670D
Coordinates
chrLK031787:-:2431234..2432289
Molecular Weight (calculated)
34826.8 Da
IEP (calculated)
5.784
GRAVY (calculated)
-0.773
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAVKKEEMK KGPWKAEEDE VLINHVNRYG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP NLKRCFFSGC KFSAEEERTV IELQAEFGNK WARIATYLPG
101: RTDNDVKNFW SSRVKRLARI LHNSSDASTS PKPPSRRNKG KNVKPIQCFY PPQFQSFGLV EEEVTTASSS SSKILPYSSS DQVDEALRLS ESGIKLEHQP
201: FSFGTDPLMS EPHIANQQAT IPFYPESREL LARLDNPYYY DILGPAGCSE PLFALPQPFF ELPPAERRCR HVSKDDEEEE EADVFLDDFP ADMFDQVDDP
301: NQSP
101: RTDNDVKNFW SSRVKRLARI LHNSSDASTS PKPPSRRNKG KNVKPIQCFY PPQFQSFGLV EEEVTTASSS SSKILPYSSS DQVDEALRLS ESGIKLEHQP
201: FSFGTDPLMS EPHIANQQAT IPFYPESREL LARLDNPYYY DILGPAGCSE PLFALPQPFF ELPPAERRCR HVSKDDEEEE EADVFLDDFP ADMFDQVDDP
301: NQSP
001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP
Arabidopsis Description
DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.