Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67827 | Canola | nucleus | 95.74 | 96.05 |
| CDX71809 | Canola | nucleus | 72.79 | 81.62 |
| CDY41164 | Canola | nucleus | 71.8 | 80.51 |
| AT3G60460.1 | Thale cress | nucleus | 78.36 | 79.67 |
| HORVU7Hr1G051740.1 | Barley | nucleus | 30.82 | 56.97 |
| VIT_15s0021g02040.t01 | Wine grape | nucleus | 52.13 | 51.46 |
| Os06t0118150-00 | Rice | nucleus | 16.39 | 50.0 |
| KRH48761 | Soybean | nucleus | 50.16 | 49.35 |
| KRH66578 | Soybean | nucleus | 49.18 | 48.23 |
| PGSC0003DMT400066066 | Potato | nucleus | 44.59 | 44.44 |
| Solyc10g019260.1.1 | Tomato | nucleus | 43.93 | 44.08 |
| Solyc01g090530.1.1 | Tomato | nucleus | 45.25 | 43.26 |
| TraesCS2B01G434400.1 | Wheat | nucleus | 40.66 | 37.46 |
| TraesCS2D01G412500.1 | Wheat | nucleus | 40.66 | 37.35 |
| TraesCS2A01G415400.1 | Wheat | nucleus | 40.66 | 37.35 |
| Zm00001d031515_P001 | Maize | nucleus | 35.41 | 36.73 |
| EES15365 | Sorghum | nucleus | 36.39 | 35.92 |
| Zm00001d002750_P001 | Maize | nucleus | 38.69 | 34.3 |
| Zm00001d026186_P001 | Maize | nucleus | 37.05 | 32.66 |
| GSMUA_Achr1P01660_001 | Banana | nucleus | 33.11 | 31.37 |
| EES11224 | Sorghum | nucleus | 38.69 | 31.22 |
| CDY69320 | Canola | nucleus | 20.33 | 30.54 |
| CDY72198 | Canola | nucleus | 20.33 | 30.54 |
| TraesCS7A01G251700.1 | Wheat | nucleus | 35.41 | 30.25 |
| TraesCS7B01G139400.1 | Wheat | nucleus | 34.75 | 29.86 |
| CDY38535 | Canola | nucleus | 26.23 | 18.52 |
| CDX83247 | Canola | nucleus | 25.9 | 18.16 |
| CDY20794 | Canola | nucleus | 24.26 | 18.0 |
| CDY19890 | Canola | nucleus | 23.93 | 17.02 |
| CDY67258 | Canola | nucleus | 23.93 | 16.98 |
| CDY19141 | Canola | nucleus | 24.59 | 16.89 |
| CDY15321 | Canola | nucleus | 24.59 | 16.74 |
| CDY66700 | Canola | nucleus | 23.28 | 15.99 |
| CDY66041 | Canola | nucleus | 24.92 | 15.8 |
| CDY08526 | Canola | nucleus | 25.9 | 15.74 |
| CDY56849 | Canola | nucleus | 25.9 | 15.71 |
| CDY68663 | Canola | nucleus | 23.28 | 15.54 |
| CDY48264 | Canola | nucleus | 23.93 | 15.24 |
| CDY12203 | Canola | nucleus | 23.93 | 15.18 |
| CDY43016 | Canola | nucleus | 25.9 | 14.26 |
| CDY61426 | Canola | nucleus | 25.9 | 14.18 |
| CDX71481 | Canola | nucleus | 24.59 | 13.16 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078JDN7 | UniProt:A0A078JDN7 | EnsemblPlants:CDY64759 | ProteinID:CDY64759 |
| ProteinID:CDY64759.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00042686001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF488 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE5C0F | SEG:seg |
Description
BnaC06g42760DBnaC06g42760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDN7]
Coordinates
chrLK034544:+:775..1826
Molecular Weight (calculated)
35113.2 Da
IEP (calculated)
6.009
GRAVY (calculated)
-0.727
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAVKKEEIK KGPWKAEEDE VLINHVNRYG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP NLKRCFFSGC KFSAEEERTV IELQAEFGNK WARIATHLPG
101: RTDNDVKNFW SSRVKRLARI LHNSSDASTS PKPPSRRNKG KIVKPIQYFY PPQVYYSFGL VEEEVTTASS SSSKILPYSS SDQVDEALRL PELGIKLEHQ
201: PFAFWTDDPL MSEPHIANQQ ATIPFYPESR ELLARLDNPY YYDILGPAGC SEPLFALPQP FFELPPAERR CRHVSKDDDE EEADVFLDDF PADMFDQVDD
301: PNQSP
101: RTDNDVKNFW SSRVKRLARI LHNSSDASTS PKPPSRRNKG KIVKPIQYFY PPQVYYSFGL VEEEVTTASS SSSKILPYSS SDQVDEALRL PELGIKLEHQ
201: PFAFWTDDPL MSEPHIANQQ ATIPFYPESR ELLARLDNPY YYDILGPAGC SEPLFALPQP FFELPPAERR CRHVSKDDDE EEADVFLDDF PADMFDQVDD
301: PNQSP
001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP
Arabidopsis Description
DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.