Factsheet for TraesCS2B01G434400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G412500.1	Wheat	nucleus	96.37	96.08
TraesCS2A01G415400.1	Wheat	nucleus	95.77	95.48
Os06t0118150-00	Rice	nucleus	18.73	62.0
Zm00001d002750_P001	Maize	nucleus	61.33	59.01
Zm00001d026186_P001	Maize	nucleus	61.33	58.67
EES11224	Sorghum	nucleus	64.35	56.35
Bra007536.1-P	Field mustard	nucleus	35.05	43.12
AT3G60460.1	Thale cress	nucleus	38.97	43.0
KRH36402	Soybean	nucleus	39.58	42.81
KRH66578	Soybean	nucleus	40.18	42.77
CDY41164	Canola	nucleus	35.05	42.65
KRH48761	Soybean	nucleus	39.88	42.58
KRH27535	Soybean	nucleus	38.67	42.52
VIT_15s0021g02040.t01	Wine grape	nucleus	39.58	42.39
CDX71809	Canola	nucleus	34.74	42.28
Bra003413.1-P	Field mustard	nucleus	36.56	41.58
PGSC0003DMT400066066	Potato	nucleus	37.76	40.85
CDX67827	Canola	nucleus	37.46	40.79
CDY64759	Canola	nucleus	37.46	40.66
Solyc10g019260.1.1	Tomato	nucleus	37.16	40.46
TraesCS7B01G139400.1	Wheat	nucleus	43.2	40.28
GSMUA_Achr1P01660_001	Banana	nucleus	38.37	39.44
Solyc01g090530.1.1	Tomato	nucleus	37.76	39.19
TraesCS7B01G357900.1	Wheat	nucleus	25.38	21.0
TraesCS7B01G031000.1	Wheat	nucleus	24.47	19.19
TraesCS1B01G318800.3	Wheat	nucleus	22.96	16.56
TraesCS7B01G278400.1	Wheat	nucleus	24.17	16.43
TraesCS3B01G367500.2	Wheat	nucleus	25.98	14.93

Protein Annotations

EnsemblPlants:TraesCS2B01G434400.1	EnsemblPlantsGene:TraesCS2B01G434400	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF488	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:624402859..624404444

Molecular Weight (calculated)

36482.9 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.603

Length

331 amino acids

Sequence
(BLAST)

001: MARAPGGAAR RRGGRRDGSG EAVRKGPWMA EEDAVLLEHV RTHGPRDWSS IRSKGALQRT GKSCRLRWVN KLRPNLKTGC KFSADEERVV IELQAQFGNK
101: WARIATYLPG RTDNDVKNFW STRQKRLARL LRAPLRARPS KTRSSNTKAP GSSVESAMGS CQDHVPSVGN SSGGQSFAAA PPMEYQDTAR ISHDQMCPGF
201: LSFEPLPLQA AAPATEGEAS SSNAAYYQLA PESSFYHHPY HLLEFPGLPE RCSVDPGFVG ASAMDDLAYQ ELLPPPHPAP MMMPFFGMEY ARDAIKVETR
301: DNFFDDLPPD VFDSFDQVPP PFSPSATNSE L

Best Arabidopsis Sequence Match ( AT3G60460.1 )
(BLAST)

001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP

Arabidopsis Description

DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.