Factsheet for PGSC0003DMT400066066

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g019260.1.1	Tomato	nucleus	91.5	92.11
HORVU7Hr1G051740.1	Barley	nucleus	31.7	58.79
VIT_15s0021g02040.t01	Wine grape	nucleus	54.9	54.37
KRH48761	Soybean	nucleus	50.0	49.35
KRH66578	Soybean	nucleus	50.0	49.2
Os06t0118150-00	Rice	nucleus	16.01	49.0
CDX71809	Canola	nucleus	42.81	48.16
Bra007536.1-P	Field mustard	nucleus	41.83	47.58
CDY41164	Canola	nucleus	41.83	47.06
AT3G60460.1	Thale cress	nucleus	44.44	45.33
Bra003413.1-P	Field mustard	nucleus	42.48	44.67
CDY64759	Canola	nucleus	44.44	44.59
CDX67827	Canola	nucleus	43.79	44.08
TraesCS2B01G434400.1	Wheat	nucleus	40.85	37.76
TraesCS2D01G412500.1	Wheat	nucleus	40.52	37.35
Zm00001d031515_P001	Maize	nucleus	35.62	37.07
TraesCS2A01G415400.1	Wheat	nucleus	40.2	37.05
EES15365	Sorghum	nucleus	35.29	34.95
Zm00001d002750_P001	Maize	nucleus	39.22	34.88
Zm00001d026186_P001	Maize	nucleus	38.24	33.81
GSMUA_Achr1P01660_001	Banana	nucleus	34.64	32.92
EES11224	Sorghum	nucleus	39.54	32.01
TraesCS7A01G251700.1	Wheat	nucleus	36.27	31.09
TraesCS7B01G139400.1	Wheat	nucleus	35.62	30.7
PGSC0003DMT400036086	Potato	nucleus	25.16	16.18
PGSC0003DMT400070549	Potato	nucleus	24.51	15.46
PGSC0003DMT400015156	Potato	nucleus	24.51	14.94
PGSC0003DMT400074486	Potato	nucleus	22.88	14.46
PGSC0003DMT400058426	Potato	nucleus	24.51	14.34

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102581309	MapMan:15.5.2.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0030154	GO:GO:0043565	GO:GO:0044839
GO:GO:0045893	GO:GO:0048235	GO:GO:0048555	GO:GO:0055047	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:M1CEY8	InterPro:Myb_dom	PFAM:PF00249	PFAM:PF13921	EnsemblPlantsGene:PGSC0003DMG400025720	PGSC:PGSC0003DMG400025720
EnsemblPlants:PGSC0003DMT400066066	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF488	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002952978	RefSeq:XP_006367748.1	SEG:seg	:	:

Description

Duo pollen 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025720]

Coordinates

chr00:-:26731859..26733397

Molecular Weight (calculated)

35627.0 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.797

Length

306 amino acids

Sequence
(BLAST)

001: MEGRRSSSSY HRHHRYEFDE DEDEIKKGPW KEEEDEVLIN HVKKYGPRDW SSIRSKGLLQ RTGKSCRLRW VNKLRPNLKN GVKFSGEEER TVIELQGQFG
101: NKWARIATYL PGRTDNDVKN FWSSRQKRLA RILRTSQNNT TQTCAFPLIL EAPKLSSSRE HEESLSKSQT CSSSYIDNSD HMMNQQLVPL EDLVMTPDSI
201: AFEPNMLMHH QLDIMSTTTI PNDEKKLGII ESSHIPTHDD FALPLENQEF PIMPNFIDVF GHGFDNVEIP FVKRQIEKPL TPDSFIDDFP LDMFKHIEPL
301: QSPSQW

Best Arabidopsis Sequence Match ( AT3G60460.1 )
(BLAST)

001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP

Arabidopsis Description

DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.