CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026186_P001	Maize	nucleus	79.1	86.42
TraesCS2A01G415400.1	Wheat	nucleus	57.14	65.06
TraesCS2D01G412500.1	Wheat	nucleus	56.88	64.76
TraesCS2B01G434400.1	Wheat	nucleus	56.35	64.35
Os06t0118150-00	Rice	nucleus	15.61	59.0
EES15365	Sorghum	nucleus	35.71	43.69
GSMUA_Achr1P01660_001	Banana	nucleus	36.24	42.55
KRH36402	Soybean	nucleus	34.39	42.48
KRH27535	Soybean	nucleus	33.6	42.19
VIT_15s0021g02040.t01	Wine grape	nucleus	34.13	41.75
Bra007536.1-P	Field mustard	nucleus	29.37	41.26
CDX71809	Canola	nucleus	29.63	41.18
KRH48761	Soybean	nucleus	33.6	40.97
KRH66578	Soybean	nucleus	33.6	40.84
CDY41164	Canola	nucleus	29.37	40.81
Bra003413.1-P	Field mustard	nucleus	30.69	39.86
Solyc10g019260.1.1	Tomato	nucleus	32.01	39.8
PGSC0003DMT400066066	Potato	nucleus	32.01	39.54
CDX67827	Canola	nucleus	31.48	39.14
AT3G60460.1	Thale cress	nucleus	30.95	39.0
Solyc01g090530.1.1	Tomato	nucleus	32.8	38.87
CDY64759	Canola	nucleus	31.22	38.69
EER90224	Sorghum	nucleus	21.96	19.39
KXG38121	Sorghum	nucleus	21.43	17.72
KXG33583	Sorghum	nucleus	22.75	15.47
KXG20323	Sorghum	nucleus	18.25	14.62

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8083361	UniProt:C5YDG5	EnsemblPlants:EES11224	ProteinID:EES11224
ProteinID:EES11224.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF488	InterPro:SANT/Myb
SMART:SM00717	EnsemblPlantsGene:SORBI_3006G169700	SUPFAM:SSF46689	UniParc:UPI0001A86F95	RefSeq:XP_002446896.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:52641135..52643059

Molecular Weight (calculated)

40075.4 Da

IEP (calculated)

8.600

GRAVY (calculated)

-0.385

Length

378 amino acids

Sequence
(BLAST)

001: MARAPGGARR RGGGGGSGRR DVAAGGGEAV RKGHWTAEED AVLLEHVRVH GPRDWSSIRS KGFLPRTGKS CRLRWVNKLR PDLKTGCKFS AEEERVVLEL
101: QAQFGNKWAR ISTYLPGRTD NDVKNFWSTR QKRLARLLGT PLRGRSSRSR NRSGSAKAQA PVASSLEPRP AAVVPCLDQV PLEGSSSGVH PCRAAIPFMD
201: AQRVPLEGSS SGVHPCSAGT PFMDAHNAAL APYDWAGSGL VSFGGALPLA SDSHACSSSN AAALPPLLPF DQPPYPLLDF PGLSAAGWNM APAGFANAGG
301: AMDHLAYQEL LPVTQPAPMM LPFFGTEYPH GGVKTELPDA APDNFFDDLP PDMFDSLDQP PPPPPPPPLS PPATSSGF

Best Arabidopsis Sequence Match ( AT3G60460.1 )
(BLAST)

001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP

Arabidopsis Description

DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.