Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41164 | Canola | nucleus | 96.32 | 96.32 |
| AT3G60460.1 | Thale cress | nucleus | 83.82 | 76.0 |
| CDX67827 | Canola | nucleus | 81.99 | 73.36 |
| CDY64759 | Canola | nucleus | 81.62 | 72.79 |
| HORVU7Hr1G051740.1 | Barley | nucleus | 34.56 | 56.97 |
| KRH48761 | Soybean | nucleus | 54.78 | 48.06 |
| Os06t0118150-00 | Rice | nucleus | 17.65 | 48.0 |
| VIT_15s0021g02040.t01 | Wine grape | nucleus | 54.04 | 47.57 |
| KRH66578 | Soybean | nucleus | 54.04 | 47.27 |
| PGSC0003DMT400066066 | Potato | nucleus | 48.16 | 42.81 |
| Solyc10g019260.1.1 | Tomato | nucleus | 47.43 | 42.43 |
| Solyc01g090530.1.1 | Tomato | nucleus | 48.9 | 41.69 |
| Zm00001d031515_P001 | Maize | nucleus | 38.24 | 35.37 |
| TraesCS2A01G415400.1 | Wheat | nucleus | 42.65 | 34.94 |
| TraesCS2B01G434400.1 | Wheat | nucleus | 42.28 | 34.74 |
| TraesCS2D01G412500.1 | Wheat | nucleus | 42.28 | 34.64 |
| EES15365 | Sorghum | nucleus | 39.34 | 34.63 |
| Zm00001d002750_P001 | Maize | nucleus | 40.44 | 31.98 |
| Zm00001d026186_P001 | Maize | nucleus | 39.34 | 30.92 |
| GSMUA_Achr1P01660_001 | Banana | nucleus | 36.4 | 30.75 |
| TraesCS7A01G251700.1 | Wheat | nucleus | 39.34 | 29.97 |
| EES11224 | Sorghum | nucleus | 41.18 | 29.63 |
| TraesCS7B01G139400.1 | Wheat | nucleus | 38.6 | 29.58 |
| CDY72198 | Canola | nucleus | 22.06 | 29.56 |
| CDY69320 | Canola | nucleus | 22.06 | 29.56 |
| CDY20794 | Canola | nucleus | 25.74 | 17.03 |
| CDY38535 | Canola | nucleus | 25.74 | 16.2 |
| CDY19890 | Canola | nucleus | 25.37 | 16.08 |
| CDY67258 | Canola | nucleus | 25.37 | 16.05 |
| CDX83247 | Canola | nucleus | 25.37 | 15.86 |
| CDY19141 | Canola | nucleus | 25.0 | 15.32 |
| CDY15321 | Canola | nucleus | 25.0 | 15.18 |
| CDY12203 | Canola | nucleus | 25.74 | 14.55 |
| CDY66041 | Canola | nucleus | 25.74 | 14.55 |
| CDY08526 | Canola | nucleus | 26.84 | 14.54 |
| CDY56849 | Canola | nucleus | 26.84 | 14.51 |
| CDY66700 | Canola | nucleus | 23.53 | 14.41 |
| CDY48264 | Canola | nucleus | 25.37 | 14.4 |
| CDY68663 | Canola | nucleus | 23.16 | 13.79 |
| CDY43016 | Canola | nucleus | 27.21 | 13.36 |
| CDY61426 | Canola | nucleus | 27.21 | 13.29 |
| CDX71481 | Canola | nucleus | 25.37 | 12.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078C6L9 | EnsemblPlants:CDX71809 | ProteinID:CDX71809 | ProteinID:CDX71809.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00155531001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFAM:PF13921 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF488 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDD5B2 | SEG:seg |
Description
BnaC08g30650D
Coordinates
chrLK031795:+:680326..681229
Molecular Weight (calculated)
30989.2 Da
IEP (calculated)
8.075
GRAVY (calculated)
-0.869
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKMEATKKE EIKKGPWKAE EDEVLINHVK RYGPRDWSSI RSKGLLQRTG KSCRLRWVNK LRPNLKNGCK FSAEEEKTVI DLQSQFGNKW ARIATYLPGR
101: TDNDVKNFWS SRLKRLARIL HNSSDASSSS CFNPKPNKGK NVKPIPSQSF GLVEEETRAS SSSTSKILPY SSSTSDQVDD EALIRSPELG IKLENHQPFT
201: FGTDLDDPFF YDILGPADSS EPLFGLSQPF FEPSPAPRRF RHVSKDDEES DVFLHDFPAD MFDQVDDQNR SP
101: TDNDVKNFWS SRLKRLARIL HNSSDASSSS CFNPKPNKGK NVKPIPSQSF GLVEEETRAS SSSTSKILPY SSSTSDQVDD EALIRSPELG IKLENHQPFT
201: FGTDLDDPFF YDILGPADSS EPLFGLSQPF FEPSPAPRRF RHVSKDDEES DVFLHDFPAD MFDQVDDQNR SP
001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP
Arabidopsis Description
DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.