CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028997.1-P	Field mustard	nucleus	96.05	96.75
CDY43016	Canola	nucleus	95.87	96.39
CDY19890	Canola	nucleus	62.3	80.89
CDY67258	Canola	nucleus	62.3	80.7
CDY20794	Canola	nucleus	57.27	77.62
AT5G55020.1	Thale cress	nucleus	71.81	76.48
CDY72198	Canola	nucleus	16.88	46.31
CDY69320	Canola	nucleus	16.88	46.31
HORVU7Hr1G105450.1	Barley	nucleus	20.65	34.64
Zm00001d033075_P001	Maize	nucleus	22.44	33.6
CDY19141	Canola	nucleus	26.75	33.56
CDY66700	Canola	nucleus	26.39	33.11
CDY15321	Canola	nucleus	26.57	33.04
HORVU7Hr1G105520.2	Barley	nucleus	22.62	32.31
CDY68663	Canola	nucleus	26.21	31.95
TraesCS7D01G446700.1	Wheat	nucleus	22.8	31.75
TraesCS7B01G357900.1	Wheat	nucleus	22.8	31.75
HORVU7Hr1G027370.1	Barley	nucleus	23.7	30.91
Zm00001d014364_P002	Maize	nucleus	22.26	30.85
EER90224	Sorghum	nucleus	23.16	30.14
TraesCS4A01G467100.1	Wheat	nucleus	15.26	30.04
CDY48264	Canola	nucleus	25.67	29.85
CDY12203	Canola	nucleus	25.67	29.73
CDY38535	Canola	nucleus	22.98	29.63
CDX83247	Canola	nucleus	22.98	29.43
TraesCS7B01G031000.1	Wheat	nucleus	22.08	29.15
TraesCS7D01G130100.1	Wheat	nucleus	22.08	28.87
Os06t0679400-01	Rice	nucleus	23.16	28.86
TraesCS6D01G126900.1	Wheat	nucleus	20.65	28.82
KXG38121	Sorghum	nucleus	23.52	28.67
Zm00001d013801_P001	Maize	nucleus	23.34	28.32
HORVU6Hr1G026450.1	Barley	nucleus	20.11	28.0
CDY41164	Canola	nucleus	13.64	27.94
CDX71809	Canola	nucleus	13.29	27.21
CDY56849	Canola	nucleus	23.7	26.24
CDY08526	Canola	nucleus	23.52	26.1
CDY66041	Canola	nucleus	22.44	25.99
CDX67827	Canola	nucleus	14.18	25.99
CDY64759	Canola	nucleus	14.18	25.9
Os03t0578900-00	Rice	nucleus	22.44	23.67
CDX71481	Canola	nucleus	23.88	23.33
Zm00001d036577_P001	Maize	nucleus	21.01	22.9

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078J922	UniProt:A0A078J922	EnsemblPlants:CDY61426	ProteinID:CDY61426
ProteinID:CDY61426.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00033843001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF475	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEE1D6	SEG:seg

Description

BnaC03g71630DBnaC03g71630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J922]

Coordinates

chrLK033995:+:27717..30821

Molecular Weight (calculated)

61726.7 Da

IEP (calculated)

6.962

GRAVY (calculated)

-0.858

Length

557 amino acids

Sequence
(BLAST)

001: MILYGVGTGN DGGSTNHISD GGGRVALKKG PWTAAEDEIL AAYVRENGEG NWNALQKHTC LARCGKSCRL RWANHLRPNL KKGSFTGDEE RIIIQLHAQL
101: GNKWARMAAQ LPGRTDNEIK NYWNTRLKRL QRQGLPLYPP DVIPNHQLHP HPQHHHHQQN QHQQMYFHPH SSQPNTPSSS PLPSPTPVNA NPSSSFSFHT
201: TNASTANLLH PLSPHTPTTP QTPSQLSSRP PPQPLSSPLS SPLNNQYPTL PLFKNNNTNF TFPRPPPLLQ PSSSLFARRY NSSNTPLNYT NRVSTAPFSP
301: VSRDSYTSFL TLPYSSSAAP NTQPITYHNT NNNYSSFSLN PSSSSYPTTT SSPSFLHSHY TPNSSSTSFH TNPVYSMKQD LPSNQIPQIC AFNNVNNFTD
401: NEKGLHRRSI SCSLLEDVME EAEALDGGGG GRPPKRRQLT YSPLNNQHNN NNNNNNDNDF FSVTFGQYDS SENICSLQDL KPKEGESLEM NTMQEDIAKL
501: LDWGSDSGEI SNGQSSAVTD ENLVLDVHQF ASLFPADSTA AANDNNDNNN FSWDDLD

Best Arabidopsis Sequence Match ( AT5G55020.1 )
(BLAST)

001: MIMYGGGGAG KDGGSTNHLS DGGVILKKGP WTAAEDEILA AYVRENGEGN WNAVQKNTGL ARCGKSCRLR WANHLRPNLK KGSFTGDEER LIIQLHAQLG
101: NKWARMAAQL PGRTDNEIKN YWNTRLKRLL RQGLPLYPPD IIPNHQLHPH PHHQQQQQHN HHHHHHQQQQ QHQQMYFQPQ SSQRNTPSSS PLPSPTPANA
201: KSSSSFTFHT TTANLLHPLS PHTPNTPSQL SSTPPPPPLS SPLCSPRNNQ YPTLPLFALP RSQINNNNNG NFTFPRPPPL LQPPSSLFAK RYNNANTPLN
301: CINRVSTAPF SPVSRDSYTS FLTLPYPSPT AQTATYHNTN NPYSSSPSFS LNPSSSSYPT STSSPSFLHS HYTPSSTSFH TNPVYSMKQE QLPSNQIPQI
401: DGFNNVNNFT DNERQNHNLN SSGAHRRSSS CSLLEDVFEE AEALASGGRG RPPKRRQLTA SLPNHNNNTN NNDNFFSVSF GHYDSSDNLC SLQGKTKTTY
501: NTSNLNYSSL QVKCKMFMIK TQI

Arabidopsis Description

ATMYB120Transcription factor MYB120 [Source:UniProtKB/Swiss-Prot;Acc:Q94FL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.