CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19890	Canola	nucleus	78.83	75.52
Bra035547.1-P	Field mustard	nucleus	98.78	74.91
CDY67258	Canola	nucleus	78.35	74.88
CDY61426	Canola	nucleus	77.62	57.27
CDY43016	Canola	nucleus	76.64	56.86
AT4G26930.1	Thale cress	nucleus	51.34	54.24
CDY72198	Canola	nucleus	20.92	42.36
CDY69320	Canola	nucleus	20.92	42.36
Zm00001d033075_P001	Maize	nucleus	27.98	30.91
HORVU7Hr1G105450.1	Barley	nucleus	24.57	30.42
TraesCS4A01G467100.1	Wheat	nucleus	19.95	28.98
HORVU7Hr1G105520.2	Barley	nucleus	27.49	28.97
TraesCS7B01G357900.1	Wheat	nucleus	27.49	28.25
CDY66700	Canola	nucleus	30.17	27.93
TraesCS7D01G446700.1	Wheat	nucleus	27.01	27.75
CDY19141	Canola	nucleus	29.93	27.7
HORVU7Hr1G027370.1	Barley	nucleus	28.71	27.63
TraesCS7B01G031000.1	Wheat	nucleus	28.22	27.49
KXG38121	Sorghum	nucleus	30.41	27.35
CDY15321	Canola	nucleus	29.68	27.23
TraesCS7D01G130100.1	Wheat	nucleus	28.22	27.23
CDY68663	Canola	nucleus	30.17	27.13
Zm00001d014364_P002	Maize	nucleus	26.03	26.62
Zm00001d013801_P001	Maize	nucleus	29.68	26.58
TraesCS6D01G126900.1	Wheat	nucleus	25.79	26.57
CDY41164	Canola	nucleus	17.52	26.47
EER90224	Sorghum	nucleus	27.49	26.4
CDX71809	Canola	nucleus	17.03	25.74
Os06t0679400-01	Rice	nucleus	27.98	25.73
CDY38535	Canola	nucleus	27.01	25.69
HORVU6Hr1G026450.1	Barley	nucleus	24.82	25.5
CDX83247	Canola	nucleus	26.52	25.06
CDY12203	Canola	nucleus	28.95	24.74
CDY48264	Canola	nucleus	28.71	24.63
CDY64759	Canola	nucleus	18.0	24.26
CDX67827	Canola	nucleus	17.76	24.01
CDY08526	Canola	nucleus	28.47	23.31
CDY56849	Canola	nucleus	28.47	23.26
CDY66041	Canola	nucleus	27.01	23.08
Os03t0578900-00	Rice	nucleus	27.74	21.59
Zm00001d036577_P001	Maize	nucleus	25.55	20.55
CDX71481	Canola	nucleus	28.22	20.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078G5W7	UniProt:A0A078G5W7	EnsemblPlants:CDY20794	ProteinID:CDY20794
ProteinID:CDY20794.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009856
GO:GO:0009987	GO:GO:0010468	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
GO:GO:0045893	GO:GO:0048235	GO:GO:0080092	GO:GO:0090406	EnsemblPlantsGene:GSBRNA2T00013029001	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF475
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF26E2	SEG:seg	:

Description

BnaA02g09340DBnaA02g09340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5W7]

Coordinates

chrLK032111:+:637660..639468

Molecular Weight (calculated)

46738.7 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.882

Length

411 amino acids

Sequence
(BLAST)

001: MVMYGGGAWK DGESNNHISE GGVALKKGPW TAAEDEMLAS YVRENGEGNW NSLQKNTGLT RCGKSCRLRW ANHLRPNLKK GSFTDDEERI IIQLHAQLGN
101: KWARMAAQLP GRTDNEIKNY WNMRLKRLQR QGLPLYPPDI ILYHQLHKHN HYHDQQHQHN QIESYTSFLT LPYSSPTAQN ATYYNTNNIY SSSPSFSLNP
201: SPSSYPTTSS SSPSFLHSYY TPNSSSTSFH TNTTYSMKQE LPSNQTLQIC AFNNVNNFTD NEKHNSTGFH RRSISCSLLE DVLKEAEAIE DISVDRPPKR
301: RQLTASPPKN HNNNGDFFSV SFGQYGSSEN TCSLQDLKSK EEVSLQMNTM QEDVAKFFDW ESNSGEILNG QSSVVTDDNL VLDVHQFESL AANYEQNNNN
401: NCSWDDLHEI R

Best Arabidopsis Sequence Match ( AT4G26930.1 )
(BLAST)

001: MIVYGGGASE DGEGGGVVLK KGPWTVAEDE TLAAYVREYG EGNWNSVQKK TWLARCGKSC RLRWANHLRP NLRKGSFTPE EERLIIQLHS QLGNKWARMA
101: AQLPGRTDNE IKNYWNTRLK RFQRQGLPLY PPEYSQNNHQ QQMYPQQPSS PLPSQTPASS FTFPLLQPPS LCPKRCYNTA FSPKASYISS PTNFLVSSPT
201: FLHTHSSLSS YQSTNPVYSM KHELSSNQIP YSASLGVYQV SKFSDNGDCN QNLNTGLHTN TCQLLEDLME EAEALADSFR APKRRQIMAA LEDNNNNNNF
301: FSGGFGHRVS SNSLCSLQGL TPKEDESLQM NTMQDEDITK LLDWGSESEE ISNGQSSVIT TENNLVLDDH QFAFLFPVDD DTNNLPGIC

Arabidopsis Description

MYB97Transcription factor MYB97 [Source:UniProtKB/Swiss-Prot;Acc:Q9S773]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.