CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83247	Canola	nucleus	55.79	73.1
CDY38535	Canola	nucleus	55.26	72.92
AT2G26960.1	Thale cress	nucleus	43.51	58.08
CDY72198	Canola	nucleus	15.79	44.34
CDY69320	Canola	nucleus	15.79	44.34
AT2G26950.1	Thale cress	cytosol	23.33	34.82
VIT_06s0009g02480.t01	Wine grape	nucleus	28.6	31.11
PGSC0003DMT400015156	Potato	nucleus	27.02	30.68
Solyc06g073640.2.1	Tomato	nucleus	26.84	30.36
KRH18640	Soybean	nucleus	28.42	30.34
KRG89766	Soybean	nucleus	27.37	29.94
HORVU7Hr1G105450.1	Barley	nucleus	17.19	29.52
CDY67258	Canola	nucleus	21.75	28.84
Zm00001d033075_P001	Maize	nucleus	18.77	28.76
PGSC0003DMT400058426	Potato	nucleus	26.32	28.68
CDY19890	Canola	nucleus	21.58	28.67
TraesCS7B01G357900.1	Wheat	nucleus	19.82	28.25
CDY20794	Canola	nucleus	20.35	28.22
Solyc01g009070.2.1	Tomato	nucleus	26.49	28.12
Zm00001d014364_P002	Maize	nucleus	19.82	28.11
TraesCS7D01G446700.1	Wheat	nucleus	19.65	28.0
HORVU7Hr1G105520.2	Barley	nucleus	19.12	27.95
CDY66700	Canola	nucleus	21.75	27.93
TraesCS4A01G467100.1	Wheat	nucleus	13.86	27.92
EER90224	Sorghum	nucleus	20.88	27.8
CDY68663	Canola	nucleus	22.11	27.57
CDY19141	Canola	nucleus	21.4	27.48
TraesCS7D01G130100.1	Wheat	nucleus	20.53	27.46
HORVU7Hr1G027370.1	Barley	nucleus	20.53	27.4
TraesCS7B01G031000.1	Wheat	nucleus	20.18	27.25
CDY15321	Canola	nucleus	21.23	27.01
CDY48264	Canola	nucleus	22.63	26.93
Os06t0679400-01	Rice	nucleus	20.88	26.62
HORVU6Hr1G026450.1	Barley	nucleus	18.6	26.5
CDY12203	Canola	nucleus	22.28	26.4
TraesCS6D01G126900.1	Wheat	nucleus	18.42	26.32
CDY08526	Canola	nucleus	22.98	26.1
CDY66041	Canola	nucleus	21.75	25.78
Zm00001d013801_P001	Maize	nucleus	20.7	25.71
CDY56849	Canola	nucleus	22.63	25.65
KXG38121	Sorghum	nucleus	20.53	25.6
CDY41164	Canola	nucleus	12.11	25.37
CDX71809	Canola	nucleus	12.11	25.37
PGSC0003DMT400070549	Potato	nucleus	21.4	25.15
CDY64759	Canola	nucleus	13.16	24.59
CDX67827	Canola	nucleus	12.98	24.34
CDY43016	Canola	nucleus	23.33	24.01
CDY61426	Canola	nucleus	23.33	23.88
Zm00001d036577_P001	Maize	nucleus	19.3	21.53
Solyc11g072060.1.1	Tomato	nucleus	20.35	21.48
Os03t0578900-00	Rice	nucleus	18.6	20.08

Protein Annotations

EnsemblPlants:CDX71481	EnsemblPlantsGene:GSBRNA2T00148359001	Gene3D:1.10.10.60	GO:A0A078C3B5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF540	PFAM:PF00249	PFscan:PS51294	ProteinID:CDX71481	ProteinID:CDX71481.1
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE60B3	MapMan:15.5.2.1	:

Description

BnaC04g17160D

Coordinates

chrLK031793:+:1333612..1337293

Molecular Weight (calculated)

64429.1 Da

IEP (calculated)

5.361

GRAVY (calculated)

-0.656

Length

570 amino acids

Sequence
(BLAST)

001: MGKVGHDSGS GKDFAIEKTF HKGPWTSAED QLLIGYVDKH GEGNWNTVQK HSGLSRCGKS CRLRWVNHLR PSLKKGSFTD KEEQRVVELH ASMGNKWARM
101: AAQLPGRTDN EIKNFWNTRL KKLQRLGLPI YPDEVREQAM NAAAQNGQNS DHSQESLEPD CLEIPEFDFK YLQLNNYQSV LLRNVPMGNM MKHCSFQPNM
201: YNLIGSPYMS PNRKRVREQE TDFLDTGDYA TNEQSAQLWN QKQFHVVPES HLLGNATTYS SPPSEPEAEK LELPSFQCFD PPGDWETQHS NPMPAVESDR
301: TLVQSPLTDC PSSGLLESVV YGSSGEKQAT NSTDPDSPLL LQSSLFGHIE LTPAFENNTE TDMFPFGPTS SSERGTSLES GDWIRQLLGE DRDYTNDNRY
401: RARTTIIPTL AGHVHLSSNI SGSANSQLHQ RFTVDTEGTR EWARYHWKYL DASFSDHLPD RQIDFPFTTS LEMSYFALPE YHIDLISESS GVALLELSRS
501: IRRFLRILQN PWQRGSETSG LAMLLVRACG AETFVPWTLL ERAGASCLFM LELNFHSGSS IYSNETGEYD

Best Arabidopsis Sequence Match ( AT2G26960.1 )
(BLAST)

001: MGKVRQDSGS DDDNSIKKSF TKGPWTQAED NLLIAYVDKH GDGNWNAVQN NSGLSRCGKS CRLRWVNHLR PDLKKGAFTE KEEKRVIELH ALLGNKWARM
101: AEELPGRTDN EIKNFWNTRL KRLQRLGLPV YPDEVREHAM NAATHSGLNT DSLDGHHSQE YMEADTVEIP EVDFEHLPLN RSSSYYQSML RHVPPTNVFV
201: RQKPCFFQPP NVYNLIPPSP YMSTGKRPRE PETAFPCPGG YTMNEQSPRL WNYPFVENVS EQLPDSHLLG NAAYSSPPGP LVHGVENFEF PSFQYHEEPG
301: GWGADQPNPM PEHESDNTLV QSPLTAQTPS DCPSSSLYDG LLESVVYGSS GEKPATDTDS ESSLFQSFTP ANENITGKTC FLTLYALHAL HCLCNQFKKS
401: PLLHLHDKLN WCNKFRFNSF KSGTHIL

Arabidopsis Description

AtMYB81Myb domain protein 81 [Source:UniProtKB/TrEMBL;Acc:Q9SLH1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.