Factsheet for Solyc06g073640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015156	Potato	nucleus	97.42	97.81
Solyc01g009070.2.1	Tomato	nucleus	61.9	58.1
VIT_06s0009g02480.t01	Wine grape	nucleus	48.61	46.76
Solyc11g072060.1.1	Tomato	nucleus	46.43	43.33
KRG89766	Soybean	nucleus	44.64	43.19
KRH18640	Soybean	nucleus	45.24	42.7
HORVU7Hr1G105450.1	Barley	nucleus	23.81	36.14
CDY38535	Canola	nucleus	29.76	34.72
Bra000531.1-P	Field mustard	nucleus	29.96	34.71
CDX83247	Canola	nucleus	29.76	34.48
TraesCS4A01G467100.1	Wheat	nucleus	19.05	33.92
Zm00001d033075_P001	Maize	nucleus	24.6	33.33
AT2G26960.1	Thale cress	nucleus	27.58	32.55
HORVU7Hr1G027370.1	Barley	nucleus	26.98	31.85
TraesCS7D01G130100.1	Wheat	nucleus	26.39	31.22
Solyc07g052300.2.1	Tomato	nucleus	29.96	31.07
HORVU7Hr1G105520.2	Barley	nucleus	24.01	31.03
Zm00001d014364_P002	Maize	nucleus	24.6	30.85
TraesCS7B01G031000.1	Wheat	nucleus	25.6	30.57
EER90224	Sorghum	nucleus	25.79	30.37
TraesCS7D01G446700.1	Wheat	nucleus	24.01	30.25
TraesCS7B01G357900.1	Wheat	nucleus	24.01	30.25
HORVU6Hr1G026450.1	Barley	nucleus	23.81	30.0
TraesCS6D01G126900.1	Wheat	nucleus	23.61	29.82
AT2G26950.1	Thale cress	cytosol	22.22	29.32
Zm00001d013801_P001	Maize	nucleus	25.79	28.32
KXG38121	Sorghum	nucleus	25.4	28.01
Os06t0679400-01	Rice	nucleus	24.21	27.29
Solyc12g005890.1.1	Tomato	nucleus	21.63	26.91
CDX71481	Canola	nucleus	30.36	26.84
Solyc10g019260.1.1	Tomato	nucleus	14.88	24.67
Os03t0578900-00	Rice	nucleus	25.79	24.62
Solyc01g090530.1.1	Tomato	nucleus	15.08	23.82
Zm00001d036577_P001	Maize	nucleus	23.41	23.09

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4C983	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF475
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g073640.2	EnsemblPlants:Solyc06g073640.2.1	UniParc:UPI0002765F99
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:45430887..45435380

Molecular Weight (calculated)

55213.3 Da

IEP (calculated)

5.666

GRAVY (calculated)

-0.581

Length

504 amino acids

Sequence
(BLAST)

001: MSMTSESDDR MTSQDGVDSP SAEEACGGGN TGGGLPLKKG PWTSAEDAIL VEYVTKHGEG NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE
101: RHIIELHAKM GNKWARMAAE LPGRTDNEIK NYWNTRIKRR QRAGLPIYPS DICFQSITEN KQNEELGTFS SADSQYPDFF PMNYEIPAVE FKRLEFNQHL
201: CPPALLDIPT GGILDIPGRS LLAQGLNSAY YSRSFLSTTP PAKRIRGSES LFSGLNGDCS PSKNDVSFST CHQHQDDGSL LAQSMGFSSS FNQNLTSDYH
301: PSSLGVIPGS HALLNGHTSS SEPSWAKKLE LPSLQSTIAS WGLVTSPLPS LDSVDTLIQS PPTEHTESCN LSPRNSGLLD AVLHESQTMK ASKSILHQEN
401: SGDVVDNSCP DLHMTEWGQH GDPISPLGHS AASVFSEYTP TSGSSSEEPQ LVTMPACKVK QEKFDYGPYD GKDDASNLIC PRPDFLLESN CFGHMQNTVR
501: SIWY

Best Arabidopsis Sequence Match ( AT3G11440.2 )
(BLAST)

001: MSYTTATADS DDGMHSSIHN ESPAPDSISN GCRSRGKRSV LKKGPWTSTE DGILIDYVKK HGEGNWNAVQ KHTSLARCGK SCRLRWANHL RPNLKKGAFS
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS GELIKVTC

Arabidopsis Description

ATMYB65Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.