Factsheet for Solyc12g005890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036086	Potato	nucleus	94.32	80.25
Bra021791.1-P	Field mustard	nucleus	23.7	24.74
CDY15321	Canola	nucleus	26.91	24.33
CDY19141	Canola	nucleus	26.42	24.1
Solyc07g052300.2.1	Tomato	nucleus	28.89	24.07
CDY68663	Canola	nucleus	25.43	22.54
CDY66700	Canola	nucleus	24.69	22.52
CDY48264	Canola	nucleus	26.17	22.13
Bra022888.1-P	Field mustard	nucleus	24.94	22.1
CDY12203	Canola	nucleus	26.17	22.04
Bra005597.1-P	Field mustard	nucleus	25.93	21.92
Zm00001d033075_P001	Maize	nucleus	20.0	21.77
Zm00001d014364_P002	Maize	nucleus	21.48	21.64
AT2G32460.1	Thale cress	nucleus	26.17	21.63
Solyc06g073640.2.1	Tomato	nucleus	26.91	21.63
HORVU7Hr1G105450.1	Barley	nucleus	17.28	21.08
TraesCS7B01G357900.1	Wheat	nucleus	20.74	21.0
KRH22574	Soybean	nucleus	24.44	20.67
HORVU7Hr1G027370.1	Barley	nucleus	21.73	20.61
EER90224	Sorghum	nucleus	21.73	20.56
KRH26778	Soybean	nucleus	24.2	20.55
TraesCS7D01G446700.1	Wheat	nucleus	20.25	20.5
TraesCS7D01G130100.1	Wheat	nucleus	21.48	20.42
HORVU7Hr1G105520.2	Barley	nucleus	19.51	20.26
TraesCS7B01G031000.1	Wheat	nucleus	20.99	20.14
VIT_12s0059g00700.t01	Wine grape	nucleus	20.99	19.95
Os06t0679400-01	Rice	nucleus	21.73	19.69
KXG38121	Sorghum	nucleus	21.98	19.47
Zm00001d013801_P001	Maize	nucleus	21.98	19.39
TraesCS6D01G126900.1	Wheat	nucleus	18.52	18.8
TraesCS4A01G467100.1	Wheat	nucleus	13.09	18.73
HORVU6Hr1G026450.1	Barley	nucleus	18.27	18.5
Solyc01g009070.2.1	Tomato	nucleus	24.44	18.44
Solyc01g090530.1.1	Tomato	nucleus	13.33	16.93
Zm00001d036577_P001	Maize	nucleus	19.75	15.66
Solyc10g019260.1.1	Tomato	nucleus	11.11	14.8
Os03t0578900-00	Rice	nucleus	19.26	14.77
Solyc11g072060.1.1	Tomato	nucleus	16.79	12.59

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4DBC7	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF475
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc12g005890.1	EnsemblPlants:Solyc12g005890.1.1	UniParc:UPI000276A4AA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:526669..529128

Molecular Weight (calculated)

45180.9 Da

IEP (calculated)

5.887

GRAVY (calculated)

-0.875

Length

405 amino acids

Sequence
(BLAST)

001: MAPSGGGVNK NNGGGTRQVL KKGPWTTTED AILMEYVKKH GEGNWNAVQR NSGLMRCGKS CRLRWRRQRA GLPIYPQDIQ PQNYQQDQNQ QHSTNIPSPF
101: DNHQNSNYNN NSPLSLLDIF NPSTMKPSRN IIPHQYQFNN NPSSPFLTNT NNINNQVKFF HDPRVSLSLT LASSMKNSQL SSIVAPVPNN FSQRYSSSMP
201: VPPLQHTYPN FTTTTRPYTT ISSNPNGLIL GMGIEHRSIP SSVPRTTSTS SDHVDNNYTI NHGLSRGNSG LLEDLLEESH TLTRGEKIEE NCPIENEDNN
301: KGKLVWEEYG LTEEAADAIF TEESTYNFSH NHSEDSSSPH SSSGITTKEA SLENIGNQVD DDIMRFLDNF PLGVPVPDWC DDQQNTSNGQ SFECDQIQLS
401: SKSSS

Best Arabidopsis Sequence Match ( AT2G32460.1 )
(BLAST)

001: MDGGGETTAT ATMEGRGLKK GPWTTTEDAI LTEYVRKHGE GNWNAVQKNS GLLRCGKSCR LRWANHLRPN LKKGSFTPDE EKIIIDLHAK LGNKWARMAS
101: QLPGRTDNEI KNYWNTRMKR RQRAGLPLYP HEIQHQGIDI DDEFEFDLTS FQFQNQDLDH NHQNMIQYTN SSNTSSSSSS FSSSSSQPSK RLRPDPLVST
201: NPGLNPIPDS SMDFQMFSLY NNSLENDNNQ FGFSVPLSSS SSSNEVCNPN HILEYISENS DTRNTNKKDI DAMSYSSLLM GDLEIRSSSF PLGLDNSVLE
301: LPSNQRPTHS FSSSPIIDNG VHLEPPSGNS GLLDALLEES QALSRGGLFK DVRVSSSDLC EVQDKRVKMD FENLLIDHLN SSNHSSLGAN PNIHNKYNEP
401: TMVKVTVDDD DELLTSLLNN FPSTTTPLPD WYRVTEMQNE ASYLAPPSGI LMGNHQGNGR VEPPTVPPSS SVDPMASLGS CYWSNMPSIC

Arabidopsis Description

MYB101Transcription factor MYB101 [Source:UniProtKB/Swiss-Prot;Acc:O80883]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.