Factsheet for Solyc01g090530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G051740.1	Barley	nucleus	28.84	55.76
VIT_15s0021g02040.t01	Wine grape	nucleus	52.98	54.69
Solyc10g019260.1.1	Tomato	nucleus	51.72	54.28
Os06t0118150-00	Rice	nucleus	15.99	51.0
KRH48761	Soybean	nucleus	48.59	50.0
CDX71809	Canola	nucleus	41.69	48.9
KRH66578	Soybean	nucleus	47.34	48.55
Bra007536.1-P	Field mustard	nucleus	40.75	48.33
CDY41164	Canola	nucleus	40.75	47.79
AT3G60460.1	Thale cress	nucleus	42.63	45.33
CDY64759	Canola	nucleus	43.26	45.25
Bra003413.1-P	Field mustard	nucleus	41.07	45.02
CDX67827	Canola	nucleus	42.63	44.74
TraesCS2B01G434400.1	Wheat	nucleus	39.19	37.76
TraesCS2D01G412500.1	Wheat	nucleus	38.87	37.35
TraesCS2A01G415400.1	Wheat	nucleus	38.87	37.35
Zm00001d031515_P001	Maize	nucleus	33.54	36.39
Zm00001d002750_P001	Maize	nucleus	38.87	36.05
EES15365	Sorghum	nucleus	33.54	34.63
Zm00001d026186_P001	Maize	nucleus	37.3	34.39
GSMUA_Achr1P01660_001	Banana	nucleus	33.54	33.23
EES11224	Sorghum	nucleus	38.87	32.8
TraesCS7A01G251700.1	Wheat	nucleus	33.23	29.69
TraesCS7B01G139400.1	Wheat	nucleus	32.92	29.58
Solyc07g052300.2.1	Tomato	nucleus	24.76	16.26
Solyc06g073640.2.1	Tomato	nucleus	23.82	15.08
Solyc01g009070.2.1	Tomato	nucleus	24.76	14.71
Solyc11g072060.1.1	Tomato	nucleus	24.14	14.26
Solyc12g005890.1.1	Tomato	nucleus	16.93	13.33

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4AYZ4	InterPro:Myb_dom	PFAM:PF00249	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF488	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g090530.1	EnsemblPlants:Solyc01g090530.1.1
UniParc:UPI0002761F53	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:84196082..84198566

Molecular Weight (calculated)

36332.2 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.676

Length

319 amino acids

Sequence
(BLAST)

001: MSEIKKGPWK EEEDQVLIKH VKKYGPRDWS SIRSKGLLQR TGKSCRLRWV NKLRPNLKNG VKFSAEEERT VIELQAQFGN KWARIATYMP GRTDNDVKNF
101: WSSRQKRLAK ILRNSVPQPS KPQKNISKEA PDLLKAPSVE EPKLNSSADE RALVVSQHCS SSYTNNFDTI NMVPLPELVN STSLPFDQEL PPLEFTPSEK
201: KICIWPQFPL PFPHIPVQTN FGQPLEHQEL PMKLEDSDFL DYFGQLSASD LGGNVQVPLA PSCSSGQDQR SSEIGVKREM AEIGVKREME YPLTPDSFIN
301: DFPLDMFDYI DPLQSPSGW

Best Arabidopsis Sequence Match ( AT3G60460.1 )
(BLAST)

001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP

Arabidopsis Description

DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.