Factsheet for TraesCS2D01G412500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G434400.1	Wheat	nucleus	96.08	96.37
TraesCS2A01G415400.1	Wheat	nucleus	95.78	95.78
Os06t0118150-00	Rice	nucleus	18.67	62.0
Zm00001d002750_P001	Maize	nucleus	62.05	59.88
Zm00001d026186_P001	Maize	nucleus	61.75	59.25
EES11224	Sorghum	nucleus	64.76	56.88
Bra007536.1-P	Field mustard	nucleus	34.94	43.12
AT3G60460.1	Thale cress	nucleus	38.86	43.0
CDY41164	Canola	nucleus	34.94	42.65
KRH66578	Soybean	nucleus	39.76	42.44
VIT_15s0021g02040.t01	Wine grape	nucleus	39.46	42.39
CDX71809	Canola	nucleus	34.64	42.28
KRH48761	Soybean	nucleus	39.46	42.26
KRH36402	Soybean	nucleus	38.86	42.16
KRH27535	Soybean	nucleus	37.95	41.86
Bra003413.1-P	Field mustard	nucleus	36.45	41.58
CDX67827	Canola	nucleus	37.35	40.79
CDY64759	Canola	nucleus	37.35	40.66
PGSC0003DMT400066066	Potato	nucleus	37.35	40.52
Solyc10g019260.1.1	Tomato	nucleus	36.75	40.13
GSMUA_Achr1P01660_001	Banana	nucleus	37.95	39.13
Solyc01g090530.1.1	Tomato	nucleus	37.35	38.87
TraesCS7D01G446700.1	Wheat	nucleus	24.1	20.0
TraesCS6D01G126900.1	Wheat	nucleus	22.89	19.05
TraesCS7D01G130100.1	Wheat	nucleus	23.8	18.54
TraesCS1D01G307500.2	Wheat	nucleus	22.29	16.12
TraesCS7D01G373400.1	Wheat	mitochondrion, nucleus	24.1	15.47
TraesCS3D01G329400.1	Wheat	nucleus	25.9	14.6

Protein Annotations

EnsemblPlants:TraesCS2D01G412500.1	EnsemblPlantsGene:TraesCS2D01G412500	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF488	PFAM:PF00249	PFAM:PF13921	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	TIGR:cd00167	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chr2D:-:527306767..527308353

Molecular Weight (calculated)

36606.1 Da

IEP (calculated)

8.137

GRAVY (calculated)

-0.571

Length

332 amino acids

Sequence
(BLAST)

001: MARAPGGAAR RRGGRRDGGG EAVRKGPWMA EEDSVLLEHV RTHGPRDWSS IRSKGALQRT GKSCRLRWVN KLRPNLKTGC KFSADEERVV IELQAQFGNK
101: WARIATYLPG RTDNDVKNFW STRQKRLARL LRAPLRARPS KTRSSNTKAS ASSLESAMGS CQDHVPSVCN SSGGQSLAAA PPMEYQDAAR ISHDQMCSGF
201: LSFEPLPLQA AAPATTEGEA SSSNAAYYQL APESSFYHHP YHLLEFPGLP ERCSIDPGFV GASAMDDLAY QELLPPLHPA PMMMPFFGME YSRDAIKVET
301: RDNFFDDLPP DVFDSFDQVP PPFSPSATNS EL

Best Arabidopsis Sequence Match ( AT3G60460.1 )
(BLAST)

001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP

Arabidopsis Description

DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.