Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G051740.1 | Barley | nucleus | 32.61 | 63.64 |
| Os06t0118150-00 | Rice | nucleus | 15.84 | 51.0 |
| Zm00001d002750_P001 | Maize | nucleus | 41.93 | 39.24 |
| TraesCS2B01G434400.1 | Wheat | nucleus | 39.44 | 38.37 |
| TraesCS2D01G412500.1 | Wheat | nucleus | 39.13 | 37.95 |
| Zm00001d031515_P001 | Maize | nucleus | 34.47 | 37.76 |
| TraesCS2A01G415400.1 | Wheat | nucleus | 38.82 | 37.65 |
| VIT_15s0021g02040.t01 | Wine grape | nucleus | 36.02 | 37.54 |
| GSMUA_Achr7P21550_001 | Banana | nucleus | 15.22 | 37.12 |
| Zm00001d026186_P001 | Maize | nucleus | 39.75 | 36.99 |
| Bra007536.1-P | Field mustard | nucleus | 30.43 | 36.43 |
| CDX71809 | Canola | nucleus | 30.75 | 36.4 |
| EES11224 | Sorghum | nucleus | 42.55 | 36.24 |
| TraesCS7A01G251700.1 | Wheat | nucleus | 40.06 | 36.13 |
| CDY41164 | Canola | nucleus | 30.43 | 36.03 |
| TraesCS7B01G139400.1 | Wheat | nucleus | 39.44 | 35.77 |
| KRH66578 | Soybean | nucleus | 34.47 | 35.69 |
| EES15365 | Sorghum | nucleus | 34.16 | 35.6 |
| KRH48761 | Soybean | nucleus | 33.85 | 35.16 |
| Solyc10g019260.1.1 | Tomato | nucleus | 32.92 | 34.87 |
| AT3G60460.1 | Thale cress | nucleus | 32.3 | 34.67 |
| PGSC0003DMT400066066 | Potato | nucleus | 32.92 | 34.64 |
| Bra003413.1-P | Field mustard | nucleus | 31.06 | 34.36 |
| KRH27535 | Soybean | nucleus | 31.99 | 34.22 |
| KRH36402 | Soybean | nucleus | 32.3 | 33.99 |
| Solyc01g090530.1.1 | Tomato | nucleus | 33.23 | 33.54 |
| CDX67827 | Canola | nucleus | 31.37 | 33.22 |
| CDY64759 | Canola | nucleus | 31.37 | 33.11 |
| GSMUA_Achr7P00280_001 | Banana | nucleus | 19.57 | 19.33 |
| GSMUA_Achr4P23690_001 | Banana | nucleus | 21.74 | 19.02 |
| GSMUA_Achr10P... | Banana | nucleus | 21.43 | 17.88 |
| GSMUA_Achr2P13930_001 | Banana | nucleus | 14.29 | 13.98 |
| GSMUA_Achr4P27730_001 | Banana | nucleus | 14.91 | 13.52 |
| GSMUA_Achr1P17150_001 | Banana | nucleus | 22.98 | 12.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.05 | 12.41 |
| GSMUA_Achr7P02510_001 | Banana | nucleus | 19.88 | 11.41 |
| GSMUA_Achr7P21560_001 | Banana | nucleus | 7.76 | 5.73 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P01660_001 | EnsemblPlants:GSMUA_Achr1T01660_001 | EnsemblPlantsGene:GSMUA_Achr1G01660_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF475 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002964565 | UniProt:M0RW74 | MapMan:15.5.2.1 | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G01660_001]
Coordinates
chr1:-:1362950..1364371
Molecular Weight (calculated)
35770.4 Da
IEP (calculated)
4.987
GRAVY (calculated)
-0.584
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MHAYNRLVVV VMDNERYSVE GGGGGGVPDI TTLGMAIRKG TWMAEEDEIL MEYVRKHGPR DWSSIRSKGL LARTGKSCRL RWVNKLKPDL KTGCKFSPEE
101: ERIVLDLQAK FGNKWARIAT YLPGRTDNDV KNFWSTRQKR LARISRSSLP PRSSKNDKEL PAVSSYEAPP NMEVSLRSSN VQCGTALYVD NQYAMSMAPS
201: PCNLGLGTAL PPLLEPATEE ELLRLPNTSM PPQPPPPQQH IGPLPQPSLD YLDHFTGEEI CFSEEFGCQG SSPCMQFLYD GSPFAREDEQ PPAPDSLFDD
301: LPSDLFDYLE PPPPPPPTSS AS
101: ERIVLDLQAK FGNKWARIAT YLPGRTDNDV KNFWSTRQKR LARISRSSLP PRSSKNDKEL PAVSSYEAPP NMEVSLRSSN VQCGTALYVD NQYAMSMAPS
201: PCNLGLGTAL PPLLEPATEE ELLRLPNTSM PPQPPPPQQH IGPLPQPSLD YLDHFTGEEI CFSEEFGCQG SSPCMQFLYD GSPFAREDEQ PPAPDSLFDD
301: LPSDLFDYLE PPPPPPPTSS AS
001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP
Arabidopsis Description
DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.