CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031515_P001	Maize	nucleus	74.76	78.57
HORVU7Hr1G051740.1	Barley	nucleus	36.25	67.88
VIT_15s0021g02040.t01	Wine grape	nucleus	39.81	39.81
Bra007536.1-P	Field mustard	nucleus	34.63	39.78
CDX71809	Canola	nucleus	34.63	39.34
CDY41164	Canola	nucleus	34.63	39.34
KRH48761	Soybean	nucleus	38.51	38.39
KRH66578	Soybean	nucleus	38.51	38.26
KRH27535	Soybean	nucleus	37.22	38.21
KRH36402	Soybean	nucleus	37.54	37.91
Bra003413.1-P	Field mustard	nucleus	35.6	37.8
AT3G60460.1	Thale cress	nucleus	35.92	37.0
TraesCS7B01G139400.1	Wheat	nucleus	42.39	36.9
TraesCS7A01G251700.1	Wheat	nucleus	42.39	36.69
CDX67827	Canola	nucleus	35.92	36.51
CDY64759	Canola	nucleus	35.92	36.39
EES11224	Sorghum	nucleus	43.69	35.71
PGSC0003DMT400066066	Potato	nucleus	34.95	35.29
Solyc10g019260.1.1	Tomato	nucleus	34.3	34.87
GSMUA_Achr1P01660_001	Banana	nucleus	35.6	34.16
Solyc01g090530.1.1	Tomato	nucleus	34.63	33.54
EER90224	Sorghum	nucleus	24.27	17.52
KXG38121	Sorghum	nucleus	24.27	16.41
KXG33583	Sorghum	nucleus	24.92	13.85
KXG20323	Sorghum	nucleus	21.04	13.77

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:C5YIL5	EnsemblPlants:EES15365	ProteinID:EES15365	ProteinID:EES15365.1
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF488	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3007G204200	SUPFAM:SSF46689	UniParc:UPI0001A878D4	RefSeq:XP_002445870.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:63490845..63493098

Molecular Weight (calculated)

34080.2 Da

IEP (calculated)

8.596

GRAVY (calculated)

-0.613

Length

309 amino acids

Sequence
(BLAST)

001: MKPGGGGGRE LSAWVRKGPW TAEEDEVLRR HVLENGPREW SSIRSKGLLP RTGKSCRLRW VNKLRPDIKK GCKFSAEEER VVIDLQAQFG NKWARIATYL
101: SGRTDNDVKN FWSTRQKRLA RLLRAPAPRR RPRGSGRQSC GGASFSYARA SPAQKLQLLC QSPCQDMIPF VETKPQLLHT GGQSSSRQED QEPGPRTVKA
201: LAIALPTHYD SASEFGSSGA TPTAATRLLS FGDDARSPAS GVDPLVFVDP DDDEAFCPEP LAVVPPSPFF GMDEEEYVHF GASMHQGVRF DDLTPETLDF
301: FGLPPSAQP

Best Arabidopsis Sequence Match ( AT3G60460.1 )
(BLAST)

001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP

Arabidopsis Description

DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.