Factsheet for Bra003413.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67827	Canola	nucleus	99.66	95.39
Bra007536.1-P	Field mustard	nucleus	73.54	79.55
AT3G60460.1	Thale cress	nucleus	80.07	77.67
HORVU7Hr1G051740.1	Barley	nucleus	32.65	57.58
Os06t0118150-00	Rice	nucleus	17.87	52.0
VIT_15s0021g02040.t01	Wine grape	nucleus	53.26	50.16
KRH48761	Soybean	nucleus	50.52	47.42
KRH66578	Soybean	nucleus	49.48	46.3
PGSC0003DMT400066066	Potato	nucleus	44.67	42.48
Solyc10g019260.1.1	Tomato	nucleus	43.99	42.11
Solyc01g090530.1.1	Tomato	nucleus	45.02	41.07
TraesCS2B01G434400.1	Wheat	nucleus	41.58	36.56
TraesCS2D01G412500.1	Wheat	nucleus	41.58	36.45
TraesCS2A01G415400.1	Wheat	nucleus	41.58	36.45
Zm00001d031515_P001	Maize	nucleus	36.77	36.39
EES15365	Sorghum	nucleus	37.8	35.6
Zm00001d002750_P001	Maize	nucleus	39.18	33.14
Zm00001d026186_P001	Maize	nucleus	37.8	31.79
GSMUA_Achr1P01660_001	Banana	nucleus	34.36	31.06
EES11224	Sorghum	nucleus	39.86	30.69
TraesCS7A01G251700.1	Wheat	nucleus	36.77	29.97
TraesCS7B01G139400.1	Wheat	nucleus	36.43	29.86
Bra000531.1-P	Field mustard	nucleus	26.8	17.93
Bra021791.1-P	Field mustard	nucleus	23.71	17.78
Bra002042.1-P	Field mustard	nucleus	25.77	15.96
Bra005597.1-P	Field mustard	nucleus	25.43	15.45
Bra022888.1-P	Field mustard	nucleus	24.05	15.32
Bra034842.1-P	Field mustard	nucleus	26.12	14.7
Bra035547.1-P	Field mustard	nucleus	26.8	14.39
Bra028997.1-P	Field mustard	nucleus	26.46	13.92
Bra002938.1-P	Field mustard	nucleus	26.46	13.39

Protein Annotations

EnsemblPlants:Bra003413.1	EnsemblPlants:Bra003413.1-P	EnsemblPlantsGene:Bra003413	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF488	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002541796	UniProt:M4CGT0	MapMan:15.5.2.1	:	:

Description

AT3G60460 (E=9e-119) DUO1 | DUO1 (DUO POLLEN 1); DNA binding / transcription factor

Coordinates

chrA07:-:13084767..13085803

Molecular Weight (calculated)

33292.1 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.760

Length

291 amino acids

Sequence
(BLAST)

001: MEAVKKEEMK KGPWKAEEDE VLINHVNRYG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP NLKSGCKFSA EEERTVIELQ AEFGNKWARI ATYLPGRTDN
101: DVKNFWSSRV KRLARILHNS SDASTSPKPP SRRNKGKNVK PIQCFYPPQF QSFGLVEEEV TTASSSSSKI LPYSSSDQVD EALRLSESGI KLEHQPFSFG
201: TDPLMSEPHI ANQQATIPFY PESRELLARL DNPYYYDILG PAGCSEPLFA LPQPFFELPP AERRCRHVSK DDEEEEEADV FLDDFPADMF D

Best Arabidopsis Sequence Match ( AT3G60460.1 )
(BLAST)

001: MRKMEAKKEE IKKGPWKAEE DEVLINHVKR YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL RPNLKNGCKF SADEERTVIE LQSEFGNKWA RIATYLPGRT
101: DNDVKNFWSS RQKRLARILH NSSDASSSSF NPKSSSSHRL KGKNVKPIRQ SSQGFGLVEE EVTVSSSCSQ MVPYSSDQVG DEVLRLPDLG VKLEHQPFAF
201: GTDLVLAEYS DSQNDANQQA ISPFSPESRE LLARLDDPFY YDILGPADSS EPLFALPQPF FEPSPVPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIPSP

Arabidopsis Description

DUO1DUO1 [Source:UniProtKB/TrEMBL;Acc:F4JBU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.