Factsheet for Bra002938.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67258	Canola	nucleus	74.26	99.3
CDY19890	Canola	nucleus	73.22	98.14
Bra028997.1-P	Field mustard	nucleus	80.87	84.09
AT5G55020.1	Thale cress	nucleus	72.7	79.92
Bra035547.1-P	Field mustard	nucleus	73.39	77.86
Bra021791.1-P	Field mustard	nucleus	25.39	37.63
HORVU7Hr1G105450.1	Barley	nucleus	20.87	36.14
Zm00001d033075_P001	Maize	nucleus	22.96	35.48
HORVU7Hr1G105520.2	Barley	nucleus	23.13	34.1
TraesCS7D01G446700.1	Wheat	nucleus	23.48	33.75
TraesCS7B01G357900.1	Wheat	nucleus	23.48	33.75
HORVU7Hr1G027370.1	Barley	nucleus	24.35	32.79
Bra022888.1-P	Field mustard	nucleus	25.04	31.51
TraesCS7B01G031000.1	Wheat	nucleus	22.78	31.04
KXG38121	Sorghum	nucleus	24.52	30.85
Zm00001d014364_P002	Maize	nucleus	21.57	30.85
EER90224	Sorghum	nucleus	22.96	30.84
TraesCS7D01G130100.1	Wheat	nucleus	22.78	30.75
TraesCS4A01G467100.1	Wheat	nucleus	15.13	30.74
Bra005597.1-P	Field mustard	nucleus	25.57	30.69
Os06t0679400-01	Rice	nucleus	23.83	30.65
Zm00001d013801_P001	Maize	nucleus	24.0	30.07
TraesCS6D01G126900.1	Wheat	nucleus	20.7	29.82
Bra000531.1-P	Field mustard	nucleus	22.43	29.66
HORVU6Hr1G026450.1	Barley	nucleus	20.0	28.75
Bra007536.1-P	Field mustard	nucleus	13.22	28.25
Bra002042.1-P	Field mustard	nucleus	22.09	27.02
Bra034842.1-P	Field mustard	nucleus	24.17	26.89
Bra003413.1-P	Field mustard	nucleus	13.39	26.46
Os03t0578900-00	Rice	nucleus	22.43	24.43
Zm00001d036577_P001	Maize	nucleus	20.35	22.9

Protein Annotations

EnsemblPlants:Bra002938.1	EnsemblPlants:Bra002938.1-P	EnsemblPlantsGene:Bra002938	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF475	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002544299	UniProt:M4CFF6	MapMan:15.5.2.1	:	:

Description

AT5G55020 (E=4e-146) ATMYB120, MYB120 | MYB120 (MYB DOMAIN PROTEIN 120); DNA binding / transcription factor

Coordinates

chrA10:-:6609572..6611523

Molecular Weight (calculated)

64213.7 Da

IEP (calculated)

6.923

GRAVY (calculated)

-0.908

Length

575 amino acids

Sequence
(BLAST)

001: MIMYGGEIEK AGGSANHMSN GGGVVLKKGP WTAAEDEILS VYVRENGEGN WNAVQKNTGL ARCGKSCRLR WANHLRPNLR KGSFTGDEER LIIQLHAQLG
101: NKWARMAAQL PGRTDNEIKN YWNTRLKRLQ RQGLPLYPPD IIPNHQLHPH PHHHQQNHHH HQQHQHQQMY FQPQSSQPNT PSSSPLPSPT AINANPSSSF
201: TFHSTNTSTA YLLHPLSPHT PTTPQTPSQL SSTPPPPPLS SPLSSPRNNQ YPTLPLFTFP SSQINNNNTN FTFPRPPPLL QPPSSLLAKR YNNSNTPLNC
301: INRVSTAPFS PVSRDSYTSF LTLPYSSPTA QTATYHNTNN NYPSFSLNPS PSSYPTTTSS PSFLHSQYTP NYSSTTFHNN PVYSMKQEFP SNQIPQIGVF
401: NNVNNFTDNE KQNNTNLHRR SISCSLLEDV LEEPEALAGG DGDRPSKRRQ LTASPPNHHN NNNNDNDNFF SVSFEQYDSS ENICSLQDLK PKEEESLQMN
501: TMQDDIAKLL DWGSDSGEIS NGQSSVLTDD NLVLDVHQLN SLFPSDSTAA ETRTNDEQNN NDKINCSWDN LHGVS

Best Arabidopsis Sequence Match ( AT5G55020.1 )
(BLAST)

001: MIMYGGGGAG KDGGSTNHLS DGGVILKKGP WTAAEDEILA AYVRENGEGN WNAVQKNTGL ARCGKSCRLR WANHLRPNLK KGSFTGDEER LIIQLHAQLG
101: NKWARMAAQL PGRTDNEIKN YWNTRLKRLL RQGLPLYPPD IIPNHQLHPH PHHQQQQQHN HHHHHHQQQQ QHQQMYFQPQ SSQRNTPSSS PLPSPTPANA
201: KSSSSFTFHT TTANLLHPLS PHTPNTPSQL SSTPPPPPLS SPLCSPRNNQ YPTLPLFALP RSQINNNNNG NFTFPRPPPL LQPPSSLFAK RYNNANTPLN
301: CINRVSTAPF SPVSRDSYTS FLTLPYPSPT AQTATYHNTN NPYSSSPSFS LNPSSSSYPT STSSPSFLHS HYTPSSTSFH TNPVYSMKQE QLPSNQIPQI
401: DGFNNVNNFT DNERQNHNLN SSGAHRRSSS CSLLEDVFEE AEALASGGRG RPPKRRQLTA SLPNHNNNTN NNDNFFSVSF GHYDSSDNLC SLQGKTKTTY
501: NTSNLNYSSL QVKCKMFMIK TQI

Arabidopsis Description

ATMYB120Transcription factor MYB120 [Source:UniProtKB/Swiss-Prot;Acc:Q94FL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.