Factsheet for Solyc11g072060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070549	Potato	nucleus	76.3	84.95
Solyc06g073640.2.1	Tomato	nucleus	43.33	46.43
Solyc01g009070.2.1	Tomato	nucleus	39.63	39.85
VIT_06s0009g02480.t01	Wine grape	nucleus	33.52	34.54
KRG89766	Soybean	nucleus	30.74	31.86
KRH18640	Soybean	nucleus	31.11	31.46
HORVU7Hr1G105450.1	Barley	nucleus	18.15	29.52
TraesCS4A01G467100.1	Wheat	nucleus	14.63	27.92
Zm00001d033075_P001	Maize	nucleus	18.89	27.42
Bra000531.1-P	Field mustard	nucleus	21.3	26.44
CDX83247	Canola	nucleus	21.3	26.44
CDY38535	Canola	nucleus	21.11	26.39
AT2G26950.1	Thale cress	cytosol	18.33	25.92
AT2G26960.1	Thale cress	nucleus	20.37	25.76
HORVU7Hr1G105520.2	Barley	nucleus	18.33	25.38
TraesCS7B01G357900.1	Wheat	nucleus	18.7	25.25
TraesCS7D01G446700.1	Wheat	nucleus	18.52	25.0
Solyc01g090530.1.1	Tomato	nucleus	14.26	24.14
Zm00001d014364_P002	Maize	nucleus	17.96	24.13
HORVU7Hr1G027370.1	Barley	nucleus	19.07	24.12
EER90224	Sorghum	nucleus	19.07	24.07
TraesCS7D01G130100.1	Wheat	nucleus	18.89	23.94
TraesCS7B01G031000.1	Wheat	nucleus	18.7	23.93
KXG38121	Sorghum	nucleus	20.19	23.85
Solyc10g019260.1.1	Tomato	nucleus	13.33	23.68
TraesCS6D01G126900.1	Wheat	nucleus	17.41	23.56
Zm00001d013801_P001	Maize	nucleus	19.81	23.31
Solyc07g052300.2.1	Tomato	nucleus	20.93	23.25
HORVU6Hr1G026450.1	Barley	nucleus	17.04	23.0
Os06t0679400-01	Rice	nucleus	18.89	22.82
CDX71481	Canola	nucleus	21.48	20.35
Zm00001d036577_P001	Maize	nucleus	18.7	19.77
Os03t0578900-00	Rice	nucleus	19.26	19.7
Solyc12g005890.1.1	Tomato	nucleus	12.59	16.79

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4DAR3	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF540
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc11g072060.1	EnsemblPlants:Solyc11g072060.1.1	UniParc:UPI000276999C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:55338169..55344262

Molecular Weight (calculated)

60756.6 Da

IEP (calculated)

8.530

GRAVY (calculated)

-0.743

Length

540 amino acids

Sequence
(BLAST)

001: MKKCSRIYKI RSLITKRRVN SAIEFRNCLE AMRCRKRYLD QWAPNGRKTN KKKLHCRQLL QLLSFRMTSE VGMNSTSVEE ANAGGNIRRG TPLKKGPWLK
101: AEDAILRDYV AEYGEGNWSS VHRRTGLARC GKSCRLRWSN HLKPYLKKGA FTQEEEQLIV AMHAQIGNKW ARIASEFPGR TDNDIKNFWN TRLKRQRREE
201: KYMLSPGVFF GEFSEDKQNK ELATSSSANS LPHLLPNNNV EIPTAENRNF EPSQQLYPPR LLNNDFSSFL GTPATSLRDQ GLNSSWNTHS VPSTVHSSKR
301: TQGLESWFSN RNVDLSQAHH QYQNDGSFFT QSLGFSSLCT HNLTSNYHRS SASEIPGIQA SSSEHRLKGK LELPSFQTPM TSWDSASSVP SIESSSTFIQ
401: SPPNEYTDSC SLSPQSSDLL HAILYGSQTP KASSSNSYQE TSRDVVPDSC PVLRQIQWGT NPDAITPSGH AITSVFSEYT PSSGGSLEDH QSIAPFIGCN
501: VNQEMANFTP TAGNNDTSND DLFSETDMYF SPSDWLRDLE

Best Arabidopsis Sequence Match ( AT3G11440.2 )
(BLAST)

001: MSYTTATADS DDGMHSSIHN ESPAPDSISN GCRSRGKRSV LKKGPWTSTE DGILIDYVKK HGEGNWNAVQ KHTSLARCGK SCRLRWANHL RPNLKKGAFS
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS GELIKVTC

Arabidopsis Description

ATMYB65Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.