Factsheet for Solyc01g009070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058426	Potato	nucleus	88.83	91.2
Solyc06g073640.2.1	Tomato	nucleus	58.1	61.9
VIT_06s0009g02480.t01	Wine grape	nucleus	42.27	43.32
KRH18640	Soybean	nucleus	40.6	40.82
KRG89766	Soybean	nucleus	39.29	40.5
Solyc11g072060.1.1	Tomato	nucleus	39.85	39.63
HORVU7Hr1G105450.1	Barley	nucleus	21.23	34.34
CDY38535	Canola	nucleus	27.37	34.03
Bra000531.1-P	Field mustard	nucleus	27.56	34.02
CDX83247	Canola	nucleus	27.37	33.79
Zm00001d033075_P001	Maize	nucleus	22.72	32.8
AT2G26960.1	Thale cress	nucleus	25.7	32.32
HORVU7Hr1G027370.1	Barley	nucleus	25.14	31.62
TraesCS7D01G130100.1	Wheat	nucleus	24.95	31.46
TraesCS4A01G467100.1	Wheat	nucleus	16.39	31.1
EER90224	Sorghum	nucleus	24.58	30.84
TraesCS7B01G031000.1	Wheat	nucleus	24.21	30.81
Zm00001d014364_P002	Maize	nucleus	22.91	30.6
HORVU7Hr1G105520.2	Barley	nucleus	22.16	30.51
TraesCS7B01G357900.1	Wheat	nucleus	22.53	30.25
TraesCS7D01G446700.1	Wheat	nucleus	22.35	30.0
Solyc07g052300.2.1	Tomato	nucleus	27.0	29.84
AT2G26950.1	Thale cress	cytosol	20.86	29.32
Zm00001d013801_P001	Maize	nucleus	24.95	29.19
KXG38121	Sorghum	nucleus	24.39	28.67
HORVU6Hr1G026450.1	Barley	nucleus	21.23	28.5
TraesCS6D01G126900.1	Wheat	nucleus	21.04	28.32
Os06t0679400-01	Rice	nucleus	22.91	27.52
CDX71481	Canola	nucleus	28.12	26.49
Solyc01g090530.1.1	Tomato	nucleus	14.71	24.76
Solyc10g019260.1.1	Tomato	nucleus	13.97	24.67
Solyc12g005890.1.1	Tomato	nucleus	18.44	24.44
Os03t0578900-00	Rice	nucleus	23.65	24.05
Zm00001d036577_P001	Maize	nucleus	22.35	23.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4ATA3	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF540
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g009070.2	EnsemblPlants:Solyc01g009070.2.1	UniParc:UPI0002763334
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3075589..3080069

Molecular Weight (calculated)

58776.9 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.615

Length

537 amino acids

Sequence
(BLAST)

001: MSIKSETEER MTSKVDMDSP DEASGGDLGE SVPLKKGPWT SAEDVILVDY VMTHGEGNWN AVQRHSGLAR CGKSCRLRWA NHLRPDLKKG AFTPEEEQRI
101: VELHAKMGNK WARMAVELPG RTDNEIKNYW NTRIKRRQRA GLPIYPADIS FMASQNKQNE ELGAFSSADA QNPDVLGINN FEIPAVEFKK LELTHLLYPP
201: QLADIPARSL LNDPVSNFLS QGHRAPYSST YFLSTTYPAK RIRGSESVFS GSNGDLLNSL QYQNDGSLLA QAQAQPLDFS SYNHNLTYDD QRAISNIVPG
301: GHAYLNGNSS SEPTWAMKLE LPSLQNQTEN WGSPHSALPS LDSVDILIQS PPAGHSESGS LSPSNSGLLD AVLHESQTMK ASNDNSYQGN ETSGNAVNNS
401: CPDLKGCDIY GHPVSPLSQF SASVFSDYAP INESSLHEFP SMATMPGGEI KQEIGDLSPL DDEDNTSNQT IFSSPKTQHA NNHLASKDPF GSCFFDDCDW
501: DCKQIHAVTT SSGQANGHNS CSWDAISAME ATGRMRL

Best Arabidopsis Sequence Match ( AT3G11440.2 )
(BLAST)

001: MSYTTATADS DDGMHSSIHN ESPAPDSISN GCRSRGKRSV LKKGPWTSTE DGILIDYVKK HGEGNWNAVQ KHTSLARCGK SCRLRWANHL RPNLKKGAFS
101: QEEEQLIVEM HAKMGNKWAQ MAEHLPGRTD NEIKNYWNTR IKRRQRAGLP LYPPEIYVDD LHWSEEYTKS NIIRVDRRRR HQDFLQLGNS KDNVLFDDLN
201: FAASLLPAAS DLSDLVACNM LGTGASSSRY ESYMPPILPS PKQIWESGSR FPMCSSNIKH EFQSPEHFQN TAVQKNPRSC SISPCDVDHH PYENQHSSHM
301: MMVPDSHTVT YGMHPTSKPL FGAVKLELPS FQYSETSAFD QWKTTPSPPH SDLLDSVDAY IQSPPPSQVE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL
401: LMSSPQKSFS STTCTTNVTQ NVPRGSENLI KSGEYEDSQK YLGRSEITSP SQLSAGGFSS GELIKVTC

Arabidopsis Description

ATMYB65Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.