Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024839.1-P | |
| Bra024840.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14240.1 | Bra024839.1-P | AT2G01950.1 | 19000166 |
| AT5G14240.1 | Bra024840.1-P | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85609 | Canola | endoplasmic reticulum, extracellular | 49.35 | 77.55 |
| Bra006245.1-P | Field mustard | nucleus | 75.97 | 45.7 |
| Bra008770.1-P | Field mustard | nucleus | 74.03 | 44.53 |
| AT5G14240.1 | Thale cress | cytosol | 72.08 | 43.36 |
| VIT_14s0171g00260.t01 | Wine grape | cytosol | 57.14 | 34.92 |
| KRG94316 | Soybean | cytosol | 53.9 | 33.88 |
| KRH27547 | Soybean | cytosol | 53.9 | 33.88 |
| Os01t0184800-01 | Rice | cytosol, nucleus, plastid | 55.19 | 33.86 |
| Solyc10g078830.1.1 | Tomato | cytosol | 53.9 | 33.07 |
| PGSC0003DMT400029686 | Potato | cytosol | 53.9 | 33.07 |
| GSMUA_Achr6P08390_001 | Banana | cytosol | 53.25 | 32.54 |
| EES00161 | Sorghum | cytosol | 52.6 | 32.4 |
| Zm00001d036057_P002 | Maize | cytosol | 52.6 | 32.4 |
| Zm00001d039560_P002 | Maize | cytosol | 51.95 | 32.0 |
| TraesCS2A01G124900.1 | Wheat | cytosol | 50.65 | 31.08 |
| TraesCS2B01G147400.1 | Wheat | cytosol | 50.65 | 31.08 |
| TraesCS2D01G127800.1 | Wheat | cytosol, nucleus, plastid | 50.65 | 31.08 |
| TraesCS3B01G131900.1 | Wheat | cytosol | 47.4 | 29.67 |
| TraesCS3A01G112100.1 | Wheat | cytosol | 46.75 | 29.27 |
| TraesCS3D01G114100.1 | Wheat | plastid | 48.05 | 23.64 |
Protein Annotations
| EnsemblPlants:Bra023452.1 | EnsemblPlants:Bra023452.1-P | EnsemblPlantsGene:Bra023452 | Gene3D:3.40.30.10 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR21148 | PANTHER:PTHR21148:SF1 | SEG:seg | SUPFAM:SSF52833 |
| TMHMM:TMhelix | UniParc:UPI000254355B | UniProt:M4E3U9 | MapMan:35.2 | : | : |
Description
AT5G14240 (E=9e-050) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Phosducin (InterPro:IPR001200), Thioredoxin-like fold (InterPro:IPR012336); Has 750 Blast hits to 750 proteins in 282 species: Archae - 0; Bacteria - 2; Metazoa - 486; Fungi - 126; Plants - 51; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Coordinates
chrA02:-:3429421..3429958
Molecular Weight (calculated)
17172.5 Da
IEP (calculated)
4.389
GRAVY (calculated)
-0.040
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMVFEIVLT DLITWLVTLT FCSFFVCLNL IVSRSVACCL DELASRYPAM KFVKIISTDC IPNYPDCNLP TLLAYRHGAV EGTHVGLKSV GRRCTPESVA
101: LVLCQSEPVL NDGKSGDDDS SREDVMAGVR RQFIERVVKD HEDKDNDDDD YNSD
101: LVLCQSEPVL NDGKSGDDDS SREDVMAGVR RQFIERVVKD HEDKDNDDDD YNSD
001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
Arabidopsis Description
Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.