Factsheet for Zm00001d036057_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039560_P002	Maize	cytosol	95.2	95.2
Os01t0184800-01	Rice	cytosol, nucleus, plastid	92.0	91.63
TraesCS2B01G147400.1	Wheat	cytosol	86.4	86.06
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	86.0	85.66
TraesCS3B01G131900.1	Wheat	cytosol	84.0	85.37
TraesCS3A01G112100.1	Wheat	cytosol	84.0	85.37
TraesCS2A01G124900.1	Wheat	cytosol	85.6	85.26
GSMUA_Achr6P08390_001	Banana	cytosol	75.6	75.0
KRH27547	Soybean	cytosol	72.0	73.47
KRG94316	Soybean	cytosol	72.0	73.47
VIT_14s0171g00260.t01	Wine grape	cytosol	74.0	73.41
CDX69595	Canola	nucleus	69.6	67.97
CDY57895	Canola	nucleus	69.2	67.58
Bra008770.1-P	Field mustard	nucleus	68.8	67.19
TraesCS3D01G114100.1	Wheat	plastid	84.0	67.09
AT5G14240.1	Thale cress	cytosol	68.4	66.8
CDX70549	Canola	nucleus	66.4	65.61
PGSC0003DMT400029686	Potato	cytosol	65.6	65.34
Solyc10g078830.1.1	Tomato	cytosol	65.6	65.34
CDX78567	Canola	nucleus	66.8	65.23
Bra006245.1-P	Field mustard	nucleus	66.8	65.23
CDX91077	Canola	nucleus	48.4	61.11
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	32.4	52.6
CDX85609	Canola	endoplasmic reticulum, extracellular	19.6	50.0

Protein Annotations

EMBL:BT035778	EMBL:EU967245	EnsemblPlants:Zm00001d036057_P002	EnsemblPlants:Zm00001d036057_T002	EnsemblPlantsGene:Zm00001d036057	EntrezGene:100193506
Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	PANTHER:PTHR21148	PANTHER:PTHR21148:SF1	PFAM:PF02114
ProteinID:AQK80222.1	ProteinID:AQK80224.1	SEG:seg	SUPFAM:SSF52833	UniParc:UPI00017B6E0E	UniProt:B4FF90
MapMan:35.2	:	:	:	:	:

Description

Thioredoxin superfamily protein

Coordinates

chr6:-:69406424..69409545

Molecular Weight (calculated)

28343.2 Da

IEP (calculated)

4.495

GRAVY (calculated)

-0.624

Length

250 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGASTEWDD IQRRLGNLPP KPEPFKPPPF APKVDADEQP KSKEWLDVRE PEELEELEDD LDDDRFLEKY RKMRLAELRE AAKAARFGTI
101: LPITGSDFVR EVSQAQSDVW VVVFLYKDGI PECGLLQNCL EELATRYPAT KFVKIISTDC IPNYPDRNVP TILVYNNSAV KGTYVGLQKF GGKRCTPESV
201: ALALCQSDPV LNDGHGGSDS SRGNVFEGVR RKFIEKVVAQ HEEREEEDSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.