Factsheet for PGSC0003DMT400029686

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078830.1.1	Tomato	cytosol	100.0	100.0
VIT_14s0171g00260.t01	Wine grape	cytosol	77.69	77.38
KRH27547	Soybean	cytosol	75.3	77.14
KRG94316	Soybean	cytosol	75.3	77.14
GSMUA_Achr6P08390_001	Banana	cytosol	72.91	72.62
CDY57895	Canola	nucleus	71.71	70.31
AT5G14240.1	Thale cress	cytosol	71.31	69.92
CDX69595	Canola	nucleus	71.31	69.92
Bra008770.1-P	Field mustard	nucleus	70.52	69.14
CDX70549	Canola	nucleus	69.32	68.77
Bra006245.1-P	Field mustard	nucleus	70.12	68.75
CDX78567	Canola	nucleus	70.12	68.75
Zm00001d039560_P002	Maize	cytosol	66.93	67.2
EES00161	Sorghum	cytosol	66.14	66.4
Os01t0184800-01	Rice	cytosol, nucleus, plastid	66.14	66.14
Zm00001d036057_P002	Maize	cytosol	65.34	65.6
CDX91077	Canola	nucleus	51.0	64.65
TraesCS3B01G131900.1	Wheat	cytosol	62.55	63.82
TraesCS2A01G124900.1	Wheat	cytosol	63.74	63.74
TraesCS2B01G147400.1	Wheat	cytosol	63.74	63.74
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	63.35	63.35
TraesCS3A01G112100.1	Wheat	cytosol	61.75	63.01
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	33.07	53.9
CDX85609	Canola	endoplasmic reticulum, extracellular	19.92	51.02
TraesCS3D01G114100.1	Wheat	plastid	63.35	50.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400029686	EnsemblPlantsGene:PGSC0003DMG400011416	EntrezGene:102601780	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf
PANTHER:PTHR21148	PANTHER:PTHR21148:SF1	PFAM:PF02114	PGSC:PGSC0003DMG400011416	RefSeq:XP_006362218.1	SEG:seg
SUPFAM:SSF52833	UniParc:UPI000276A3EA	UniProt:M1AT98	MapMan:35.2	:	:

Description

Phosducin [Source:PGSC_GENE;Acc:PGSC0003DMG400011416]

Coordinates

chr10:-:58885561..58890660

Molecular Weight (calculated)

28399.3 Da

IEP (calculated)

4.550

GRAVY (calculated)

-0.626

Length

251 amino acids

Sequence
(BLAST)

001: MGDYHFVYKD VEGASTQWDD IQRKLGNLPP KAPVFKPDPF TPGEDEGSKS KDKDWIDEKT QDELDDLEDD PDLNDDRFLQ EYRKKRMAEM REVAKVVRFG
101: SVIPISGSDF VREVSQAPED IWVVVLLYKD GYSGCQILLQ CLDELATKYP VTKFVKIIST DCIPNYPDCN LPTVLVYHNG ALKSNYVGLH SFGRRCTPEG
201: VALTLCQSDP VLNDGRSKKE QSREAVLDGV RKRFLEKVVA QHEDDDGSSS D

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.