Factsheet for Zm00001d039560_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00161	Sorghum	cytosol	97.6	97.6
Zm00001d036057_P002	Maize	cytosol	95.2	95.2
Os01t0184800-01	Rice	cytosol, nucleus, plastid	92.8	92.43
TraesCS2B01G147400.1	Wheat	cytosol	85.6	85.26
TraesCS3B01G131900.1	Wheat	cytosol	83.6	84.96
TraesCS3A01G112100.1	Wheat	cytosol	83.6	84.96
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	85.2	84.86
TraesCS2A01G124900.1	Wheat	cytosol	85.2	84.86
GSMUA_Achr6P08390_001	Banana	cytosol	76.0	75.4
KRG94316	Soybean	cytosol	73.2	74.69
KRH27547	Soybean	cytosol	73.2	74.69
VIT_14s0171g00260.t01	Wine grape	cytosol	75.2	74.6
CDY57895	Canola	nucleus	70.4	68.75
CDX69595	Canola	nucleus	70.0	68.36
Bra008770.1-P	Field mustard	nucleus	69.2	67.58
PGSC0003DMT400029686	Potato	cytosol	67.2	66.93
Solyc10g078830.1.1	Tomato	cytosol	67.2	66.93
AT5G14240.1	Thale cress	cytosol	68.4	66.8
TraesCS3D01G114100.1	Wheat	plastid	83.6	66.77
CDX70549	Canola	nucleus	67.2	66.4
CDX78567	Canola	nucleus	67.6	66.02
Bra006245.1-P	Field mustard	nucleus	67.6	66.02
CDX91077	Canola	nucleus	48.8	61.62
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	32.0	51.95
CDX85609	Canola	endoplasmic reticulum, extracellular	19.6	50.0

Protein Annotations

EMBL:BT038018	EnsemblPlants:Zm00001d039560_P002	EnsemblPlants:Zm00001d039560_T002	EnsemblPlantsGene:Zm00001d039560	EntrezGene:100217149	Gene3D:3.40.30.10
InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	PANTHER:PTHR21148	PANTHER:PTHR21148:SF1	PFAM:PF02114	ProteinID:ONM29197.1
ProteinID:ONM29198.1	SEG:seg	SUPFAM:SSF52833	UniParc:UPI00017B6B27	UniProt:B4FLN0	MapMan:35.2

Description

Thioredoxin superfamily protein

Coordinates

chr3:+:7987440..7994846

Molecular Weight (calculated)

28289.2 Da

IEP (calculated)

4.539

GRAVY (calculated)

-0.622

Length

250 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGASTQWDD IQRRLGNLPP KPEPFKPPPF APKVDAGEQP KSKEWLDERE AEELEELEDD LDDDRFLEQY RKMRLAELRE AAKAARFGSI
101: VPITGSDFVR EVSQAPSEVW VVVFLYKDGI PECGLLQNCL EELATRYPAT KFVKIISTDC IPNYPDRNVP TILVYNNSAV KGTYVGLQKF GGKRCTPESV
201: ALALCQSDPV LNDGHGGSHS SRDNVIEGVR RKFIEKVVAQ HEEREEEDSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.