Factsheet for Solyc10g078830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029686	Potato	cytosol	100.0	100.0
VIT_14s0171g00260.t01	Wine grape	cytosol	77.69	77.38
KRH27547	Soybean	cytosol	75.3	77.14
KRG94316	Soybean	cytosol	75.3	77.14
GSMUA_Achr6P08390_001	Banana	cytosol	72.91	72.62
CDY57895	Canola	nucleus	71.71	70.31
AT5G14240.1	Thale cress	cytosol	71.31	69.92
CDX69595	Canola	nucleus	71.31	69.92
Bra008770.1-P	Field mustard	nucleus	70.52	69.14
CDX70549	Canola	nucleus	69.32	68.77
Bra006245.1-P	Field mustard	nucleus	70.12	68.75
CDX78567	Canola	nucleus	70.12	68.75
Zm00001d039560_P002	Maize	cytosol	66.93	67.2
EES00161	Sorghum	cytosol	66.14	66.4
Os01t0184800-01	Rice	cytosol, nucleus, plastid	66.14	66.14
Zm00001d036057_P002	Maize	cytosol	65.34	65.6
CDX91077	Canola	nucleus	51.0	64.65
TraesCS3B01G131900.1	Wheat	cytosol	62.55	63.82
TraesCS2A01G124900.1	Wheat	cytosol	63.74	63.74
TraesCS2B01G147400.1	Wheat	cytosol	63.74	63.74
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	63.35	63.35
TraesCS3A01G112100.1	Wheat	cytosol	61.75	63.01
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	33.07	53.9
CDX85609	Canola	endoplasmic reticulum, extracellular	19.92	51.02
TraesCS3D01G114100.1	Wheat	plastid	63.35	50.8

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479
GO:GO:0008616	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	UniProt:K4D2C4	PFAM:PF02114
PANTHER:PTHR21148	PANTHER:PTHR21148:SF1	InterPro:Phosducin_thioredoxin-like_dom	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc10g078830.1	EnsemblPlants:Solyc10g078830.1.1
InterPro:Thioredoxin-like_sf	UniParc:UPI000276A3EA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:60523039..60526986

Molecular Weight (calculated)

28399.3 Da

IEP (calculated)

4.550

GRAVY (calculated)

-0.626

Length

251 amino acids

Sequence
(BLAST)

001: MGDYHFVYKD VEGASTQWDD IQRKLGNLPP KAPVFKPDPF TPGEDEGSKS KDKDWIDEKT QDELDDLEDD PDLNDDRFLQ EYRKKRMAEM REVAKVVRFG
101: SVIPISGSDF VREVSQAPED IWVVVLLYKD GYSGCQILLQ CLDELATKYP VTKFVKIIST DCIPNYPDCN LPTVLVYHNG ALKSNYVGLH SFGRRCTPEG
201: VALTLCQSDP VLNDGRSKKE QSREAVLDGV RKRFLEKVVA QHEDDDGSSS D

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.