CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	CDY03088	AT2G01950.1	19000166
AT5G14240.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006245.1-P	Field mustard	nucleus	99.61	99.61
CDX70549	Canola	nucleus	96.48	97.63
CDX69595	Canola	nucleus	93.75	93.75
CDY57895	Canola	nucleus	93.75	93.75
AT5G14240.1	Thale cress	cytosol	92.58	92.58
CDX91077	Canola	nucleus	69.92	90.4
VIT_14s0171g00260.t01	Wine grape	cytosol	72.27	73.41
CDX85609	Canola	endoplasmic reticulum, extracellular	27.73	72.45
KRG94316	Soybean	cytosol	69.14	72.24
KRH27547	Soybean	cytosol	69.14	72.24
Solyc10g078830.1.1	Tomato	cytosol	68.75	70.12
PGSC0003DMT400029686	Potato	cytosol	68.75	70.12
Os01t0184800-01	Rice	cytosol, nucleus, plastid	66.8	68.13
Zm00001d039560_P002	Maize	cytosol	66.02	67.6
EES00161	Sorghum	cytosol	65.62	67.2
Zm00001d036057_P002	Maize	cytosol	65.23	66.8
GSMUA_Achr6P08390_001	Banana	cytosol	65.62	66.67
TraesCS2A01G124900.1	Wheat	cytosol	62.89	64.14
TraesCS2B01G147400.1	Wheat	cytosol	62.5	63.74
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	62.5	63.74
TraesCS3A01G112100.1	Wheat	cytosol	60.16	62.6
TraesCS3B01G131900.1	Wheat	cytosol	60.16	62.6
TraesCS3D01G114100.1	Wheat	plastid	61.33	50.16

Protein Annotations

EnsemblPlants:CDX78567	EnsemblPlantsGene:GSBRNA2T00129977001	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	PANTHER:PTHR21148
PANTHER:PTHR21148:SF1	PFAM:PF02114	ProteinID:CDX78567	ProteinID:CDX78567.1	SEG:seg	SUPFAM:SSF52833
UniParc:UPI0004EF0D21	MapMan:35.2	:	:	:	:

Description

BnaA03g04790D

Coordinates

chrLK031815:-:1337095..1338374

Molecular Weight (calculated)

28906.6 Da

IEP (calculated)

4.467

GRAVY (calculated)

-0.718

Length

256 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGTSTQWDD IQRKLGNLPA KAPAFKPPAY TPEQDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLTEL REAAKVKRYG
101: SVTPISSSDF MREVTQASAE DWVVVCLYKD GFAECGLLLG CLDELSSRYP ATKFVKIIST DCIPNYPDCN LPTLVVYRHG AVKGTHVGLK SLGRRCTPES
201: VALVLCQSEP VLNDGKSGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD DGYNSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.