Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr2P15100_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G14240.1 | GSMUA_Achr2P15100_001 | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH27547 | Soybean | cytosol | 74.6 | 76.73 |
EES00161 | Sorghum | cytosol | 75.79 | 76.4 |
KRG94316 | Soybean | cytosol | 74.21 | 76.33 |
VIT_14s0171g00260.t01 | Wine grape | cytosol | 76.19 | 76.19 |
Zm00001d039560_P002 | Maize | cytosol | 75.4 | 76.0 |
Zm00001d036057_P002 | Maize | cytosol | 75.0 | 75.6 |
Os01t0184800-01 | Rice | cytosol, nucleus, plastid | 74.21 | 74.5 |
TraesCS2B01G147400.1 | Wheat | cytosol | 73.02 | 73.31 |
PGSC0003DMT400029686 | Potato | cytosol | 72.62 | 72.91 |
Solyc10g078830.1.1 | Tomato | cytosol | 72.62 | 72.91 |
TraesCS2A01G124900.1 | Wheat | cytosol | 72.22 | 72.51 |
TraesCS3B01G131900.1 | Wheat | cytosol | 70.63 | 72.36 |
TraesCS2D01G127800.1 | Wheat | cytosol, nucleus, plastid | 71.83 | 72.11 |
TraesCS3A01G112100.1 | Wheat | cytosol | 70.24 | 71.95 |
CDX69595 | Canola | nucleus | 69.44 | 68.36 |
CDY57895 | Canola | nucleus | 69.05 | 67.97 |
Bra008770.1-P | Field mustard | nucleus | 68.65 | 67.58 |
CDX70549 | Canola | nucleus | 66.67 | 66.4 |
AT5G14240.1 | Thale cress | cytosol | 67.06 | 66.02 |
Bra006245.1-P | Field mustard | nucleus | 66.67 | 65.62 |
CDX78567 | Canola | nucleus | 66.67 | 65.62 |
CDX91077 | Canola | nucleus | 46.43 | 59.09 |
TraesCS3D01G114100.1 | Wheat | plastid | 71.03 | 57.19 |
Bra023452.1-P | Field mustard | endoplasmic reticulum, extracellular | 32.54 | 53.25 |
CDX85609 | Canola | endoplasmic reticulum, extracellular | 17.86 | 45.92 |
Protein Annotations
EnsemblPlants:GSMUA_Achr6P08390_001 | EnsemblPlants:GSMUA_Achr6T08390_001 | EnsemblPlantsGene:GSMUA_Achr6G08390_001 | Gene3D:3.40.30.10 | InterPro:Phosducin_thioredoxin-like_dom | InterPro:Thioredoxin-like_sf |
PANTHER:PTHR21148 | PANTHER:PTHR21148:SF1 | PFAM:PF02114 | SEG:seg | SUPFAM:SSF52833 | UniParc:UPI000295A497 |
UniProt:M0T588 | MapMan:35.2 | : | : | : | : |
Description
Putative Viral IAP-associated factor homolog [Source:GMGC_GENE;Acc:GSMUA_Achr6G08390_001]
Coordinates
chr6:+:5593630..5596997
Molecular Weight (calculated)
28365.3 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.500
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYHFVYKD VEGASTQWDD IQRRLGNLPP KPEPFKPAPF SPADDPDLAP KSKAWIDDRT PAELDELEDD PELDDDRFLQ EYRKRRLAEM REVAKVARFG
101: SVMPISGSDF VREVSQAPAD VWVVVLLYKD SIQDCGLLLC CLEELATKYP ATKFVKIIST ECIPNYPDRN LPTILVYNNG AVKGTYVGLH QFGSRRCTPE
201: AVALALCQSD PVLNDGQTGS SSTEGIIRGV QKRFIEKFVA DHEEKEDDDY SD
101: SVMPISGSDF VREVSQAPAD VWVVVLLYKD SIQDCGLLLC CLEELATKYP ATKFVKIIST ECIPNYPDRN LPTILVYNNG AVKGTYVGLH QFGSRRCTPE
201: AVALALCQSD PVLNDGQTGS SSTEGIIRGV QKRFIEKFVA DHEEKEDDDY SD
001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
Arabidopsis Description
Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.