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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14240.1 GSMUA_Achr2P15100_001 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH27547 Soybean cytosol 74.6 76.73
EES00161 Sorghum cytosol 75.79 76.4
KRG94316 Soybean cytosol 74.21 76.33
VIT_14s0171g00260.t01 Wine grape cytosol 76.19 76.19
Zm00001d039560_P002 Maize cytosol 75.4 76.0
Zm00001d036057_P002 Maize cytosol 75.0 75.6
Os01t0184800-01 Rice cytosol, nucleus, plastid 74.21 74.5
TraesCS2B01G147400.1 Wheat cytosol 73.02 73.31
PGSC0003DMT400029686 Potato cytosol 72.62 72.91
Solyc10g078830.1.1 Tomato cytosol 72.62 72.91
TraesCS2A01G124900.1 Wheat cytosol 72.22 72.51
TraesCS3B01G131900.1 Wheat cytosol 70.63 72.36
TraesCS2D01G127800.1 Wheat cytosol, nucleus, plastid 71.83 72.11
TraesCS3A01G112100.1 Wheat cytosol 70.24 71.95
CDX69595 Canola nucleus 69.44 68.36
CDY57895 Canola nucleus 69.05 67.97
Bra008770.1-P Field mustard nucleus 68.65 67.58
CDX70549 Canola nucleus 66.67 66.4
AT5G14240.1 Thale cress cytosol 67.06 66.02
Bra006245.1-P Field mustard nucleus 66.67 65.62
CDX78567 Canola nucleus 66.67 65.62
CDX91077 Canola nucleus 46.43 59.09
TraesCS3D01G114100.1 Wheat plastid 71.03 57.19
Bra023452.1-P Field mustard endoplasmic reticulum, extracellular 32.54 53.25
CDX85609 Canola endoplasmic reticulum, extracellular 17.86 45.92
Protein Annotations
EnsemblPlants:GSMUA_Achr6P08390_001EnsemblPlants:GSMUA_Achr6T08390_001EnsemblPlantsGene:GSMUA_Achr6G08390_001Gene3D:3.40.30.10InterPro:Phosducin_thioredoxin-like_domInterPro:Thioredoxin-like_sf
PANTHER:PTHR21148PANTHER:PTHR21148:SF1PFAM:PF02114SEG:segSUPFAM:SSF52833UniParc:UPI000295A497
UniProt:M0T588MapMan:35.2::::
Description
Putative Viral IAP-associated factor homolog [Source:GMGC_GENE;Acc:GSMUA_Achr6G08390_001]
Coordinates
chr6:+:5593630..5596997
Molecular Weight (calculated)
28365.3 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.500
Length
252 amino acids
Sequence
(BLAST)
001: MADYHFVYKD VEGASTQWDD IQRRLGNLPP KPEPFKPAPF SPADDPDLAP KSKAWIDDRT PAELDELEDD PELDDDRFLQ EYRKRRLAEM REVAKVARFG
101: SVMPISGSDF VREVSQAPAD VWVVVLLYKD SIQDCGLLLC CLEELATKYP ATKFVKIIST ECIPNYPDRN LPTILVYNNG AVKGTYVGLH QFGSRRCTPE
201: AVALALCQSD PVLNDGQTGS SSTEGIIRGV QKRFIEKFVA DHEEKEDDDY SD
Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)
001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
Arabidopsis Description
Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.