Factsheet for TraesCS3D01G114100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G14240.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G14240.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G131900.1	Wheat	cytosol	77.32	98.37
TraesCS3A01G112100.1	Wheat	cytosol	77.0	97.97
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	76.04	94.82
Zm00001d036057_P002	Maize	cytosol	67.09	84.0
EES00161	Sorghum	cytosol	67.09	84.0
Zm00001d039560_P002	Maize	cytosol	66.77	83.6
Os01t0184800-01	Rice	cytosol, nucleus, plastid	66.77	83.27
GSMUA_Achr6P08390_001	Banana	cytosol	57.19	71.03
KRG94316	Soybean	cytosol	54.95	70.2
KRH27547	Soybean	cytosol	54.95	70.2
VIT_14s0171g00260.t01	Wine grape	cytosol	55.91	69.44
CDX69595	Canola	nucleus	53.04	64.84
CDY57895	Canola	nucleus	52.72	64.45
Bra008770.1-P	Field mustard	nucleus	52.4	64.06
PGSC0003DMT400029686	Potato	cytosol	50.8	63.35
Solyc10g078830.1.1	Tomato	cytosol	50.8	63.35
AT5G14240.1	Thale cress	cytosol	51.44	62.89
CDX70549	Canola	nucleus	49.84	61.66
CDX78567	Canola	nucleus	50.16	61.33
Bra006245.1-P	Field mustard	nucleus	50.16	61.33
CDX91077	Canola	nucleus	36.42	57.58
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	23.64	48.05
CDX85609	Canola	endoplasmic reticulum, extracellular	13.74	43.88

Protein Annotations

EnsemblPlants:TraesCS3D01G114100.1	EnsemblPlantsGene:TraesCS3D01G114100	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	PANTHER:PTHR21148
PANTHER:PTHR21148:SF1	PFAM:PF02114	SEG:seg	SUPFAM:SSF52833	TIGR:cd02988	MapMan:35.2

Description

No Description!

Coordinates

chr3D:+:67710273..67712809

Molecular Weight (calculated)

35289.6 Da

IEP (calculated)

4.808

GRAVY (calculated)

-0.619

Length

313 amino acids

Sequence
(BLAST)

001: MSRPAKSLYP NDQRAQPARD TRIRPIPRVR GAPPVSRALP FSSFPFRFSS CPDLSLSRAR SLLRGSAMAD YHFVYKDVEG ATTQWDDIQR KLGNLPEKPP
101: PFKPPPFAPR ADADEQPRSK EWLDARDPDE LEELEDDLDD DRFLEQYRRM RLAELKEAAK TARFGTVQPI TGSDFVREVS QAPPDVWVVV FLYKDAIPEC
201: GLLETCLEEL ATKYAETKFV KIISTDCIPN YPDRNVPTIL VYNNSAVKGT YVGLQKFGGK KCTPESVALA LCDSDPVLND GQGGNNVMEG VRRKFIEKVV
301: SQLETREDED DSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.