Factsheet for VIT_14s0171g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27547	Soybean	cytosol	82.14	84.49
KRG94316	Soybean	cytosol	82.14	84.49
Solyc10g078830.1.1	Tomato	cytosol	77.38	77.69
PGSC0003DMT400029686	Potato	cytosol	77.38	77.69
GSMUA_Achr6P08390_001	Banana	cytosol	76.19	76.19
Zm00001d039560_P002	Maize	cytosol	74.6	75.2
EES00161	Sorghum	cytosol	74.21	74.8
CDY57895	Canola	nucleus	75.79	74.61
CDX69595	Canola	nucleus	75.79	74.61
Zm00001d036057_P002	Maize	cytosol	73.41	74.0
Bra008770.1-P	Field mustard	nucleus	75.0	73.83
Os01t0184800-01	Rice	cytosol, nucleus, plastid	72.62	72.91
CDX70549	Canola	nucleus	72.62	72.33
CDX78567	Canola	nucleus	73.41	72.27
Bra006245.1-P	Field mustard	nucleus	73.41	72.27
AT5G14240.1	Thale cress	cytosol	73.02	71.88
TraesCS3A01G112100.1	Wheat	cytosol	68.65	70.33
TraesCS3B01G131900.1	Wheat	cytosol	68.65	70.33
TraesCS2A01G124900.1	Wheat	cytosol	69.84	70.12
TraesCS2B01G147400.1	Wheat	cytosol	69.84	70.12
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	69.44	69.72
CDX91077	Canola	nucleus	54.76	69.7
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	34.92	57.14
TraesCS3D01G114100.1	Wheat	plastid	69.44	55.91
CDX85609	Canola	endoplasmic reticulum, extracellular	20.24	52.04

Protein Annotations

EntrezGene:100244131	wikigene:100244131	Gene3D:3.40.30.10	MapMan:35.2	ProteinID:CBI40065	ProteinID:CBI40065.3
UniProt:D7UBF0	EMBL:FN596749	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479
GO:GO:0008616	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EntrezGene:LOC100244131	wikigene:LOC100244131
PFAM:PF02114	PANTHER:PTHR21148	PANTHER:PTHR21148:SF1	InterPro:Phosducin_thioredoxin-like_dom	SUPFAM:SSF52833	TIGR:TC53328
InterPro:Thioredoxin-like_sf	UniParc:UPI00015C979F	ArrayExpress:VIT_14s0171g00260	EnsemblPlantsGene:VIT_14s0171g00260	EnsemblPlants:VIT_14s0171g00260.t01	unigene:Vvi.641
RefSeq:XP_002263692	RefSeq:XP_002263692.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:26097768..26100344

Molecular Weight (calculated)

28472.4 Da

IEP (calculated)

4.523

GRAVY (calculated)

-0.662

Length

252 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGASTQWDD IQRKLGNLPP KDPPFKPPPF TPAPDDHSKP KDKSWIDQKT EEELEDLEDD PDLDDHRFLE EYRKKRLAEM REAVKISRFG
101: SVMPISGSDF VREVSQAPSD VWVVVILYKE GIPECGLLMR CLEELATRYP ATKFVKIIST DCIPNYPDRN LPTLLVYNNG AVKANYAGLH NFGRRCTPEG
201: VALVLCQSDP VLNDGQSGSG PSREDVIEGV RKRFIEKVVT EHEDDDDGSS SD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.