Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14240.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT5G14240.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78567 | Canola | nucleus | 90.4 | 69.92 |
| CDX70549 | Canola | nucleus | 87.88 | 68.77 |
| CDX85609 | Canola | endoplasmic reticulum, extracellular | 33.84 | 68.37 |
| CDX69595 | Canola | nucleus | 88.38 | 68.36 |
| CDY57895 | Canola | nucleus | 88.38 | 68.36 |
| AT5G14240.1 | Thale cress | cytosol | 85.35 | 66.02 |
| VIT_14s0171g00260.t01 | Wine grape | cytosol | 69.7 | 54.76 |
| KRG94316 | Soybean | cytosol | 64.65 | 52.24 |
| KRH27547 | Soybean | cytosol | 64.65 | 52.24 |
| PGSC0003DMT400029686 | Potato | cytosol | 64.65 | 51.0 |
| Solyc10g078830.1.1 | Tomato | cytosol | 64.65 | 51.0 |
| Os01t0184800-01 | Rice | cytosol, nucleus, plastid | 63.13 | 49.8 |
| Zm00001d039560_P002 | Maize | cytosol | 61.62 | 48.8 |
| EES00161 | Sorghum | cytosol | 61.11 | 48.4 |
| Zm00001d036057_P002 | Maize | cytosol | 61.11 | 48.4 |
| TraesCS2A01G124900.1 | Wheat | cytosol | 59.6 | 47.01 |
| TraesCS2B01G147400.1 | Wheat | cytosol | 59.09 | 46.61 |
| TraesCS2D01G127800.1 | Wheat | cytosol, nucleus, plastid | 59.09 | 46.61 |
| GSMUA_Achr6P08390_001 | Banana | cytosol | 59.09 | 46.43 |
| TraesCS3A01G112100.1 | Wheat | cytosol | 56.57 | 45.53 |
| TraesCS3B01G131900.1 | Wheat | cytosol | 56.57 | 45.53 |
| TraesCS3D01G114100.1 | Wheat | plastid | 57.58 | 36.42 |
Protein Annotations
| EnsemblPlants:CDX91077 | EnsemblPlantsGene:GSBRNA2T00151850001 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR21148 | PANTHER:PTHR21148:SF1 | ProteinID:CDX91077 |
| ProteinID:CDX91077.1 | SEG:seg | SUPFAM:SSF52833 | UniParc:UPI0004EE1223 | MapMan:35.2 | : |
Description
BnaC02g05200D
Coordinates
chrLK031865:+:650370..651348
Molecular Weight (calculated)
22804.4 Da
IEP (calculated)
4.491
GRAVY (calculated)
-0.947
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYHFVYKD VEGMSTQWDD IQRKLGNLPA KAPAFKPPSY TPEQDESSAP KDKSWFDKKT EDELEDLEDD KDLDDDRFLE EYRKKRLTKL REAAKVRRPL
101: LKSEDWVVVC RFAECGLMLG CLDELASRYP STNVGRRCTL ESVALVLCQS EPVLHDGKSG DDDSSREAVM TGVRRQFIER VVKDHEDKDN DDDGYNSD
101: LKSEDWVVVC RFAECGLMLG CLDELASRYP STNVGRRCTL ESVALVLCQS EPVLHDGKSG DDDSSREAVM TGVRRQFIER VVKDHEDKDN DDDGYNSD
001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
Arabidopsis Description
Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.