Factsheet for Os01t0184800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00161	Sorghum	cytosol	94.02	94.4
Zm00001d039560_P002	Maize	cytosol	92.43	92.8
Zm00001d036057_P002	Maize	cytosol	91.63	92.0
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	86.06	86.06
TraesCS2B01G147400.1	Wheat	cytosol	86.06	86.06
TraesCS2A01G124900.1	Wheat	cytosol	85.66	85.66
TraesCS3B01G131900.1	Wheat	cytosol	83.27	84.96
TraesCS3A01G112100.1	Wheat	cytosol	83.27	84.96
GSMUA_Achr6P08390_001	Banana	cytosol	74.5	74.21
VIT_14s0171g00260.t01	Wine grape	cytosol	72.91	72.62
KRG94316	Soybean	cytosol	70.52	72.24
KRH27547	Soybean	cytosol	70.52	72.24
CDY57895	Canola	nucleus	70.12	68.75
CDX69595	Canola	nucleus	70.12	68.75
Bra008770.1-P	Field mustard	nucleus	69.32	67.97
CDX70549	Canola	nucleus	67.73	67.19
AT5G14240.1	Thale cress	cytosol	68.13	66.8
CDX78567	Canola	nucleus	68.13	66.8
Bra006245.1-P	Field mustard	nucleus	68.13	66.8
TraesCS3D01G114100.1	Wheat	plastid	83.27	66.77
PGSC0003DMT400029686	Potato	cytosol	66.14	66.14
Solyc10g078830.1.1	Tomato	cytosol	66.14	66.14
CDX91077	Canola	nucleus	49.8	63.13
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	33.86	55.19
CDX85609	Canola	endoplasmic reticulum, extracellular	21.12	54.08

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.2	EntrezGene:4325346	EMBL:AK073377	EMBL:AK102544	ProteinID:BAB03357.1
ProteinID:BAF04150.1	ProteinID:BAS70768.1	ProteinID:EEE54008.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008479	GO:GO:0008616	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:Os01g0184800
EnsemblPlants:Os01t0184800-01	PFAM:PF02114	PANTHER:PTHR21148	PANTHER:PTHR21148:SF1	InterPro:Phosducin_thioredoxin-like_dom	UniProt:Q9LGR1
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00000A99A1	RefSeq:XP_015617067.1	SEG:seg	:

Description

Thioredoxin fold domain containing protein. (Os01t0184800-01)

Coordinates

chr1:-:4494615..4497597

Molecular Weight (calculated)

28379.1 Da

IEP (calculated)

4.305

GRAVY (calculated)

-0.654

Length

251 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGASTEWDD IQRRLGNLPP KPEPFKPPAY APKVDADEQP KSKEWLDERE PDELEDLEDD LDDDRFLEQY RRMRLAELRE AAKAAKFGSI
101: VPITGSDFVR EVSQAPSDVW VVVFLYKDGI PECGLLQTCL DELATRYPAT KFVKIISTDC IPNYPDRNVP TILVYNNSAV KGTYVGLQKF GGKRCTPESV
201: ALALCQSEPV LNDGQSGGDS SRDNVIEGVR RKFIEKVVAQ HEEREEDDDS D

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.