CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039560_P002	Maize	cytosol	97.6	97.6
Os01t0184800-01	Rice	cytosol, nucleus, plastid	94.4	94.02
TraesCS2B01G147400.1	Wheat	cytosol	86.4	86.06
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	86.0	85.66
TraesCS2A01G124900.1	Wheat	cytosol	86.0	85.66
TraesCS3B01G131900.1	Wheat	cytosol	84.0	85.37
TraesCS3A01G112100.1	Wheat	cytosol	84.0	85.37
GSMUA_Achr6P08390_001	Banana	cytosol	76.4	75.79
KRH27547	Soybean	cytosol	72.8	74.29
KRG94316	Soybean	cytosol	72.8	74.29
VIT_14s0171g00260.t01	Wine grape	cytosol	74.8	74.21
CDY57895	Canola	nucleus	70.0	68.36
CDX69595	Canola	nucleus	70.0	68.36
Bra008770.1-P	Field mustard	nucleus	69.2	67.58
TraesCS3D01G114100.1	Wheat	plastid	84.0	67.09
PGSC0003DMT400029686	Potato	cytosol	66.4	66.14
Solyc10g078830.1.1	Tomato	cytosol	66.4	66.14
AT5G14240.1	Thale cress	cytosol	67.6	66.02
CDX70549	Canola	nucleus	66.8	66.01
CDX78567	Canola	nucleus	67.2	65.62
Bra006245.1-P	Field mustard	nucleus	67.2	65.62
CDX91077	Canola	nucleus	48.4	61.11
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	32.4	52.6
CDX85609	Canola	endoplasmic reticulum, extracellular	20.0	51.02

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.2	EntrezGene:8084375	UniProt:C5XMK8	EnsemblPlants:EES00161	ProteinID:EES00161
ProteinID:EES00161.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	PFAM:PF02114	PANTHER:PTHR21148	PANTHER:PTHR21148:SF1
InterPro:Phosducin_thioredoxin-like_dom	EnsemblPlantsGene:SORBI_3003G038600	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001A844A9	RefSeq:XP_002455041.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:3599524..3602771

Molecular Weight (calculated)

28423.2 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.675

Length

250 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGRSTEWDD IQRRLGNLPP KPEPFKPPPF APKVDADEQP KSKEWLDERE PEELEELEDD LDDDRFLEQY RKMRLAELRE AAKAARFGSI
101: VPITGSDFVR EVSQAPSDVW VVVFLYKDGI PECGLLQNCL EELATRYPAT KFVKIISTDC IPNYPDRNVP TILVYNNSAV KGTYVGLQKF GGKRCTPESV
201: ALALCQSDPV LNDGHGGSDS SRDNVIEGVR RKFIEKVVAQ HEEREEEDSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.