CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	KRH42483	AT2G01950.1	19000166
AT5G14240.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94316	Soybean	cytosol	98.37	98.37
VIT_14s0171g00260.t01	Wine grape	cytosol	84.49	82.14
Solyc10g078830.1.1	Tomato	cytosol	77.14	75.3
PGSC0003DMT400029686	Potato	cytosol	77.14	75.3
GSMUA_Achr6P08390_001	Banana	cytosol	76.73	74.6
Zm00001d039560_P002	Maize	cytosol	74.69	73.2
EES00161	Sorghum	cytosol	74.29	72.8
Zm00001d036057_P002	Maize	cytosol	73.47	72.0
CDY57895	Canola	nucleus	75.1	71.88
CDX69595	Canola	nucleus	75.1	71.88
Bra008770.1-P	Field mustard	nucleus	74.29	71.09
Os01t0184800-01	Rice	cytosol, nucleus, plastid	72.24	70.52
CDX70549	Canola	nucleus	72.65	70.36
AT5G14240.1	Thale cress	cytosol	72.65	69.53
Bra006245.1-P	Field mustard	nucleus	72.24	69.14
CDX78567	Canola	nucleus	72.24	69.14
TraesCS3B01G131900.1	Wheat	cytosol	69.39	69.11
TraesCS3A01G112100.1	Wheat	cytosol	68.98	68.7
TraesCS2A01G124900.1	Wheat	cytosol	69.8	68.13
TraesCS2B01G147400.1	Wheat	cytosol	69.8	68.13
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	68.98	67.33
CDX91077	Canola	nucleus	52.24	64.65
TraesCS3D01G114100.1	Wheat	plastid	70.2	54.95
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	33.88	53.9
CDX85609	Canola	endoplasmic reticulum, extracellular	20.0	50.0

Protein Annotations

EntrezGene:100797814	Gene3D:3.40.30.10	MapMan:35.2	EMBL:ACUP02007813	EnsemblPlantsGene:GLYMA_12G242000	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	UniProt:I1LVI1	EnsemblPlants:KRH27547	ProteinID:KRH27547	ProteinID:KRH27547.1	PFAM:PF02114
PANTHER:PTHR21148	PANTHER:PTHR21148:SF1	InterPro:Phosducin_thioredoxin-like_dom	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000233CEB9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:40042233..40047763

Molecular Weight (calculated)

27510.3 Da

IEP (calculated)

4.462

GRAVY (calculated)

-0.519

Length

245 amino acids

Sequence
(BLAST)

001: MGDYHFVYKD LEGASTQWDD IQRKLGNLPP KAPAFKPPPF TPASDDQPKD KTWIDSKTSE ELEDLEDNLD DDRFLQEYRK KRLAEMQEAA KVLRFGSVIP
101: ISGSDFVREV SQAPSDVWVV VILYKEGIPE CGLLMQSIEE LALRYPSTKF VKIISTDCIP NYPDRNLPTL LVYNNGAVKG NYVGLHSFGR RCTPEGVALV
201: LCQSDPVLND GHNGNEAIIE GVRKRFIEKV VADHEEGGDD DYSSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.