CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	CDY03088	AT2G01950.1	19000166
AT5G14240.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008770.1-P	Field mustard	nucleus	99.22	99.22
CDY57895	Canola	nucleus	99.22	99.22
CDX78567	Canola	nucleus	93.75	93.75
CDX70549	Canola	nucleus	92.19	93.28
AT5G14240.1	Thale cress	cytosol	91.41	91.41
CDX91077	Canola	nucleus	68.36	88.38
VIT_14s0171g00260.t01	Wine grape	cytosol	74.61	75.79
KRG94316	Soybean	cytosol	71.88	75.1
KRH27547	Soybean	cytosol	71.88	75.1
CDX85609	Canola	endoplasmic reticulum, extracellular	28.12	73.47
Solyc10g078830.1.1	Tomato	cytosol	69.92	71.31
PGSC0003DMT400029686	Potato	cytosol	69.92	71.31
Os01t0184800-01	Rice	cytosol, nucleus, plastid	68.75	70.12
EES00161	Sorghum	cytosol	68.36	70.0
Zm00001d039560_P002	Maize	cytosol	68.36	70.0
Zm00001d036057_P002	Maize	cytosol	67.97	69.6
GSMUA_Achr6P08390_001	Banana	cytosol	68.36	69.44
TraesCS2A01G124900.1	Wheat	cytosol	66.41	67.73
TraesCS2B01G147400.1	Wheat	cytosol	66.02	67.33
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	66.02	67.33
TraesCS3A01G112100.1	Wheat	cytosol	63.67	66.26
TraesCS3B01G131900.1	Wheat	cytosol	63.67	66.26
TraesCS3D01G114100.1	Wheat	plastid	64.84	53.04

Protein Annotations

EnsemblPlants:CDX69595	EnsemblPlantsGene:GSBRNA2T00135609001	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	PANTHER:PTHR21148
PANTHER:PTHR21148:SF1	PFAM:PF02114	ProteinID:CDX69595	ProteinID:CDX69595.1	SEG:seg	SUPFAM:SSF52833
UniParc:UPI0004EDF915	MapMan:35.2	:	:	:	:

Description

BnaA10g19440D

Coordinates

chrLK031790:+:943830..945173

Molecular Weight (calculated)

28760.4 Da

IEP (calculated)

4.467

GRAVY (calculated)

-0.666

Length

256 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGTSTQWDD IQRKLGNLPE KAPAFKPPAY TPAQDEDSAP KDKAWFDGKT EEELEDLEDD KDLDDDRFLE DYRKKRLTEL REAAKVRRYG
101: SVTPISSSDF VREVTQASAE VWVVVCLYKD GIAECGLLLG CLEELASRYP GTKFVKIIST DCIPNYPDCN LPTLLVYHHG AVKGTHVGLK SVGRRCTPES
201: VALVLCQSEP VLNDGKSGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD DGYNSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.