Factsheet for TraesCS3B01G131900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G14240.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G14240.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G112100.1	Wheat	cytosol	98.78	98.78
TraesCS2B01G147400.1	Wheat	cytosol	97.15	95.22
Zm00001d036057_P002	Maize	cytosol	85.37	84.0
EES00161	Sorghum	cytosol	85.37	84.0
Zm00001d039560_P002	Maize	cytosol	84.96	83.6
Os01t0184800-01	Rice	cytosol, nucleus, plastid	84.96	83.27
TraesCS3D01G114100.1	Wheat	plastid	98.37	77.32
GSMUA_Achr6P08390_001	Banana	cytosol	72.36	70.63
KRG94316	Soybean	cytosol	69.11	69.39
KRH27547	Soybean	cytosol	69.11	69.39
VIT_14s0171g00260.t01	Wine grape	cytosol	70.33	68.65
CDX69595	Canola	nucleus	66.26	63.67
CDY57895	Canola	nucleus	65.85	63.28
Bra008770.1-P	Field mustard	nucleus	65.45	62.89
PGSC0003DMT400029686	Potato	cytosol	63.82	62.55
Solyc10g078830.1.1	Tomato	cytosol	63.82	62.55
AT5G14240.1	Thale cress	cytosol	64.23	61.72
CDX70549	Canola	nucleus	62.2	60.47
CDX78567	Canola	nucleus	62.6	60.16
Bra006245.1-P	Field mustard	nucleus	62.6	60.16
CDX91077	Canola	nucleus	45.53	56.57
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	29.67	47.4
CDX85609	Canola	endoplasmic reticulum, extracellular	17.89	44.9

Protein Annotations

EnsemblPlants:TraesCS3B01G131900.1	EnsemblPlantsGene:TraesCS3B01G131900	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	PANTHER:PTHR21148
PANTHER:PTHR21148:SF1	PFAM:PF02114	SEG:seg	SUPFAM:SSF52833	TIGR:cd02988	MapMan:35.2

Description

No Description!

Coordinates

chr3B:-:114143665..114145888

Molecular Weight (calculated)

27883.7 Da

IEP (calculated)

4.348

GRAVY (calculated)

-0.621

Length

246 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGATTQWDD IQRKLGNLPE KPAPFKPPPF APRADADEQP RSKEWLDARD PDELEELEDD LDDDRFLEQY RRMRLAEFKE AAKTARFGTI
101: QPITGSDFVR EVSQAPPDVW VVVFLYKDAI PECGLLETCL EELATKYAET KFVKIISTDC IPNYPDRNVP TILVYNNSAV KGTYVGLQKF GGKKCTPESV
201: ALALCHSDPV LNDGQGGNNV MEGVRRKFIE KVVSQLETRE DEDDSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.