CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	CDY03088	AT2G01950.1	19000166
AT5G14240.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78567	Canola	nucleus	97.63	96.48
CDX69595	Canola	nucleus	93.28	92.19
CDY57895	Canola	nucleus	93.28	92.19
AT5G14240.1	Thale cress	cytosol	90.91	89.84
CDX91077	Canola	nucleus	68.77	87.88
CDX85609	Canola	endoplasmic reticulum, extracellular	28.46	73.47
KRG94316	Soybean	cytosol	70.36	72.65
KRH27547	Soybean	cytosol	70.36	72.65
VIT_14s0171g00260.t01	Wine grape	cytosol	72.33	72.62
PGSC0003DMT400029686	Potato	cytosol	68.77	69.32
Solyc10g078830.1.1	Tomato	cytosol	68.77	69.32
Os01t0184800-01	Rice	cytosol, nucleus, plastid	67.19	67.73
Zm00001d039560_P002	Maize	cytosol	66.4	67.2
EES00161	Sorghum	cytosol	66.01	66.8
GSMUA_Achr6P08390_001	Banana	cytosol	66.4	66.67
Zm00001d036057_P002	Maize	cytosol	65.61	66.4
TraesCS2A01G124900.1	Wheat	cytosol	63.24	63.74
TraesCS2B01G147400.1	Wheat	cytosol	62.85	63.35
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	62.85	63.35
TraesCS3A01G112100.1	Wheat	cytosol	60.47	62.2
TraesCS3B01G131900.1	Wheat	cytosol	60.47	62.2
TraesCS3D01G114100.1	Wheat	plastid	61.66	49.84

Protein Annotations

EnsemblPlants:CDX70549	EnsemblPlantsGene:GSBRNA2T00140387001	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	PANTHER:PTHR21148
PANTHER:PTHR21148:SF1	PFAM:PF02114	ProteinID:CDX70549	ProteinID:CDX70549.1	SEG:seg	SUPFAM:SSF52833
UniParc:UPI0004EEA847	MapMan:35.2	:	:	:	:

Description

BnaC03g06330D

Coordinates

chrLK031791:-:983086..984407

Molecular Weight (calculated)

28618.4 Da

IEP (calculated)

4.531

GRAVY (calculated)

-0.694

Length

253 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGTSTQWDD IQRKLGNLPA KAPAFKPPAY TPEQDDPKDQ AWFDKMTEEK LEDLEDDKDL DDDRFLQEYR KKRLTELREA AKVKRYGSVT
101: PISSSDFMRE VTQASAEDWV VVCLYKDGFA ECGLLLGCLD ELASRYPATK FVKIISTDCI PNYPDCNLPT LVVYRHGAVK GTHVGLKSVG RRCTPESVAL
201: VLCQSEPVLN DGKSGDDDSS REAVMAGVRR QFIERVVKDH EDKDNDDDGY NSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.