Factsheet for TraesCS2D01G127800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT5G14240.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT5G14240.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G147400.1	Wheat	cytosol	98.41	98.41
TraesCS2A01G124900.1	Wheat	cytosol	97.61	97.61
Os01t0184800-01	Rice	cytosol, nucleus, plastid	86.06	86.06
Zm00001d036057_P002	Maize	cytosol	85.66	86.0
EES00161	Sorghum	cytosol	85.66	86.0
Zm00001d039560_P002	Maize	cytosol	84.86	85.2
TraesCS3D01G114100.1	Wheat	plastid	94.82	76.04
GSMUA_Achr6P08390_001	Banana	cytosol	72.11	71.83
VIT_14s0171g00260.t01	Wine grape	cytosol	69.72	69.44
KRG94316	Soybean	cytosol	67.33	68.98
KRH27547	Soybean	cytosol	67.33	68.98
CDX69595	Canola	nucleus	67.33	66.02
CDY57895	Canola	nucleus	66.93	65.62
Bra008770.1-P	Field mustard	nucleus	66.53	65.23
AT5G14240.1	Thale cress	cytosol	65.34	64.06
PGSC0003DMT400029686	Potato	cytosol	63.35	63.35
Solyc10g078830.1.1	Tomato	cytosol	63.35	63.35
CDX70549	Canola	nucleus	63.35	62.85
CDX78567	Canola	nucleus	63.74	62.5
Bra006245.1-P	Field mustard	nucleus	63.74	62.5
CDX91077	Canola	nucleus	46.61	59.09
Bra023452.1-P	Field mustard	endoplasmic reticulum, extracellular	31.08	50.65
CDX85609	Canola	endoplasmic reticulum, extracellular	18.73	47.96

Protein Annotations

EnsemblPlants:TraesCS2D01G127800.1	EnsemblPlantsGene:TraesCS2D01G127800	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	PANTHER:PTHR21148
PANTHER:PTHR21148:SF1	PFAM:PF02114	SEG:seg	SUPFAM:SSF52833	TIGR:cd02988	MapMan:35.2

Description

No Description!

Coordinates

chr2D:-:74279335..74281936

Molecular Weight (calculated)

28531.4 Da

IEP (calculated)

4.406

GRAVY (calculated)

-0.660

Length

251 amino acids

Sequence
(BLAST)

001: MADYHFVYRD VEGATTQWDD IQRKLGNLPE KPEPFKPPPF APRVDADEQP KSKEWLDARD PDELEELEDD LDDDRFLEQY RRMRLAELKE AAKTARFGTV
101: QPITGSDFVR EVSQAPRDVW VVVFLYKDAI PECGLLETCL EELATKYAET KFVKIISTDC IPNYPDRNVP TILVYNNSAV KGTYVGLQKF GGKKCTPESV
201: ALALCHSYPV LNDGQGGGDS SRNNVMEGVR RKFIEKVVSQ LETREDEDDS D

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.