CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14240.1	CDY03088	AT2G01950.1	19000166
AT5G14240.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69595	Canola	nucleus	99.22	99.22
CDX78567	Canola	nucleus	93.75	93.75
CDX70549	Canola	nucleus	92.19	93.28
AT5G14240.1	Thale cress	cytosol	91.41	91.41
CDX91077	Canola	nucleus	68.36	88.38
VIT_14s0171g00260.t01	Wine grape	cytosol	74.61	75.79
KRG94316	Soybean	cytosol	71.88	75.1
KRH27547	Soybean	cytosol	71.88	75.1
CDX85609	Canola	endoplasmic reticulum, extracellular	28.12	73.47
PGSC0003DMT400029686	Potato	cytosol	70.31	71.71
Solyc10g078830.1.1	Tomato	cytosol	70.31	71.71
Zm00001d039560_P002	Maize	cytosol	68.75	70.4
Os01t0184800-01	Rice	cytosol, nucleus, plastid	68.75	70.12
EES00161	Sorghum	cytosol	68.36	70.0
Zm00001d036057_P002	Maize	cytosol	67.58	69.2
GSMUA_Achr6P08390_001	Banana	cytosol	67.97	69.05
TraesCS2A01G124900.1	Wheat	cytosol	66.02	67.33
TraesCS2B01G147400.1	Wheat	cytosol	65.62	66.93
TraesCS2D01G127800.1	Wheat	cytosol, nucleus, plastid	65.62	66.93
TraesCS3A01G112100.1	Wheat	cytosol	63.28	65.85
TraesCS3B01G131900.1	Wheat	cytosol	63.28	65.85
TraesCS3D01G114100.1	Wheat	plastid	64.45	52.72

Protein Annotations

EnsemblPlants:CDY57895	EnsemblPlantsGene:GSBRNA2T00022794001	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	ncoils:Coil
PANTHER:PTHR21148	PANTHER:PTHR21148:SF1	PFAM:PF02114	ProteinID:CDY57895	ProteinID:CDY57895.1	SEG:seg
SUPFAM:SSF52833	UniParc:UPI0004EEC0F3	UniProt:A0A078IZK5	MapMan:35.2	:	:

Description

BnaC09g54410DBnaC09g54410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZK5]

Coordinates

chrLK033614:-:15232..16595

Molecular Weight (calculated)

28788.5 Da

IEP (calculated)

4.471

GRAVY (calculated)

-0.657

Length

256 amino acids

Sequence
(BLAST)

001: MADYHFVYKD VEGTSTQWDD IQRKLGNLPE KAPAFKPPAY TPAQDEASAP KDKAWFDEKT EEELEDLEDD KDLDDDRFLE DYRKKRLTEL REAAKVRRYG
101: SVTPISSSDF VREVTQASAE VWVVVCLYKD GIAECGLLLG CLEELASRYP GTKFVKIIST DCIPNYPDCN LPTLLVYHHG AVKGTHVGLK SVGRRCTPES
201: VALVLCQSEP VLNDGKSGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD DGYNSD

Best Arabidopsis Sequence Match ( AT5G14240.1 )
(BLAST)

001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.