Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14240.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT5G14240.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023452.1-P | Field mustard | endoplasmic reticulum, extracellular | 77.55 | 49.35 |
| CDX91077 | Canola | nucleus | 68.37 | 33.84 |
| CDX70549 | Canola | nucleus | 73.47 | 28.46 |
| CDX69595 | Canola | nucleus | 73.47 | 28.12 |
| CDY57895 | Canola | nucleus | 73.47 | 28.12 |
| CDX78567 | Canola | nucleus | 72.45 | 27.73 |
| AT5G14240.1 | Thale cress | cytosol | 70.41 | 26.95 |
| Os01t0184800-01 | Rice | cytosol, nucleus, plastid | 54.08 | 21.12 |
| KRG94316 | Soybean | cytosol | 51.02 | 20.41 |
| VIT_14s0171g00260.t01 | Wine grape | cytosol | 52.04 | 20.24 |
| KRH27547 | Soybean | cytosol | 50.0 | 20.0 |
| EES00161 | Sorghum | cytosol | 51.02 | 20.0 |
| PGSC0003DMT400029686 | Potato | cytosol | 51.02 | 19.92 |
| Solyc10g078830.1.1 | Tomato | cytosol | 51.02 | 19.92 |
| Zm00001d036057_P002 | Maize | cytosol | 50.0 | 19.6 |
| Zm00001d039560_P002 | Maize | cytosol | 50.0 | 19.6 |
| TraesCS2A01G124900.1 | Wheat | cytosol | 47.96 | 18.73 |
| TraesCS2B01G147400.1 | Wheat | cytosol | 47.96 | 18.73 |
| TraesCS2D01G127800.1 | Wheat | cytosol, nucleus, plastid | 47.96 | 18.73 |
| TraesCS3B01G131900.1 | Wheat | cytosol | 44.9 | 17.89 |
| GSMUA_Achr6P08390_001 | Banana | cytosol | 45.92 | 17.86 |
| TraesCS3A01G112100.1 | Wheat | cytosol | 43.88 | 17.48 |
| TraesCS3D01G114100.1 | Wheat | plastid | 43.88 | 13.74 |
Protein Annotations
| EnsemblPlants:CDX85609 | EnsemblPlantsGene:GSBRNA2T00143333001 | GO:A0A078DBB5 | ProteinID:CDX85609 | ProteinID:CDX85609.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EEA369 | MapMan:35.2 | : | : | : |
Description
BnaA02g02040D
Coordinates
chrLK031842:+:855294..855821
Molecular Weight (calculated)
11021.0 Da
IEP (calculated)
4.089
GRAVY (calculated)
-0.059
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MGMVFEIVLI TWLVTLTFCS FFVCLNLIVS RSSVGRRCTP ESVALVLCQS EPVLNDGKSG DDDSSREAVM AGVRRQFIER VVKDYEDKDT DDDDYNSD
001: MADYHFVYKD IEGASTQWDD IQRKLGNLPE KAPAFKPPAY TPAEDESSAP KDQAWFDKKT EEELEDLEDD KDLDDDRFLE EYRKKRLSEL REAAKVKRYG
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
101: TVTPISGSDF VREVTQASAE DWVVVCLYKD GVAECSLLLG CLDELGSRYP ATKFVKIIST DCIPNYPDCN LPTLLVYHHG AIKGTHVGLK SFGRRCTPES
201: VALLLCQSEP VLNDGKGGDD DSSREAVMAG VRRQFIERVV KDHEDKDNDD GGYNSD
Arabidopsis Description
Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYA5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.