Factsheet for Bra031147.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13852	Canola	plastid	99.66	99.66
AT2G20890.1	Thale cress	plastid	82.43	81.33
KRH26888	Soybean	nucleus, plastid	70.95	70.71
VIT_12s0057g00020.t01	Wine grape	plastid	71.28	70.57
KRH22464	Soybean	nucleus, plastid	69.93	69.7
KRH56048	Soybean	nucleus, plastid	67.23	68.38
KRH25480	Soybean	nucleus, plastid	67.23	68.38
Os07t0558500-01	Rice	plastid	65.54	67.6
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	65.2	67.48
GSMUA_Achr9P12190_001	Banana	plastid	64.86	67.37
EER99538	Sorghum	plastid	64.53	67.25
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	64.86	67.13
TraesCS2B01G233300.1	Wheat	plastid	64.86	67.13
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	66.22	66.89
TraesCS2D01G210000.1	Wheat	plastid	64.53	66.78
Zm00001d006588_P001	Maize	plastid	63.85	66.55
GSMUA_Achr8P03730_001	Banana	plastid	60.81	62.72
Solyc07g054820.2.1	Tomato	plastid	48.99	58.0
Zm00001d021764_P002	Maize	plastid	52.7	51.66
KRH13607	Soybean	cytosol	9.12	36.0

Protein Annotations

MapMan:1.1.1.3.10	EnsemblPlantsGene:Bra031147	EnsemblPlants:Bra031147.1	EnsemblPlants:Bra031147.1-P	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006810	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009507	GO:GO:0009527	GO:GO:0009528	GO:GO:0009532	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987
GO:GO:0010027	GO:GO:0010182	GO:GO:0010207	GO:GO:0010319	GO:GO:0015979	GO:GO:0015996
GO:GO:0016020	GO:GO:0016043	GO:GO:0045037	GO:GO:0045038	GO:GO:1902458	GO:GO:1903426
GO:GO:2000070	UniProt:M4EQS4	HAMAP:MF_01843	PFAM:PF11264	PANTHER:PTHR34793	PANTHER:PTHR34793:SF5
TIGRFAMs:TIGR03060	InterPro:Thf1	UniParc:UPI00025428F5	SEG:seg	:	:

Description

AT2G20890 (E=3e-116) PSB29, THF1 | PSB29

Coordinates

chrA09:-:32302449..32303656

Molecular Weight (calculated)

33239.5 Da

IEP (calculated)

9.603

GRAVY (calculated)

-0.431

Length

296 amino acids

Sequence
(BLAST)

001: MAAIASLSFP ALGQSGKLSN PTPSRPLASV SAISRRISRR SLTSSRPSTS SSKFVIHCMS SVTDVPPVSE TKSNFLKAYK RPIPSIYNTV LQELIVQQHL
101: MRYKRTYRYD PVFALGFVTV YDQLMDGYPS DQDRDSIFQA YVEALNEDPK QYRIDAQKME EWARSQTSAS LVDFSSKEGE VEAILKDISE RAGSKEGFSY
201: SRFFAVGLFR LLELAGATDP TVLDKLCASL NINKKSVDRD LDVYRNLLSK LVQAKELLKE YVEREKKKRG ERAESQKANE SISKSLGDNN SLSFLV

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.