Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20890.1 | VIT_18s0072g01030.t01 | AT1G35670.1 | 19130088 |
| AT2G20890.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26888 | Soybean | nucleus, plastid | 76.92 | 77.44 |
| KRH22464 | Soybean | nucleus, plastid | 76.59 | 77.1 |
| KRH56048 | Soybean | nucleus, plastid | 72.58 | 74.57 |
| KRH25480 | Soybean | nucleus, plastid | 72.58 | 74.57 |
| GSMUA_Achr9P12190_001 | Banana | plastid | 69.57 | 72.98 |
| Bra031147.1-P | Field mustard | plastid | 70.57 | 71.28 |
| CDY13852 | Canola | plastid | 70.57 | 71.28 |
| CDX81988 | Canola | plastid | 70.23 | 71.19 |
| PGSC0003DMT400047218 | Potato | cytosol, extracellular, plastid | 69.57 | 70.99 |
| GSMUA_Achr8P03730_001 | Banana | plastid | 66.56 | 69.34 |
| Os07t0558500-01 | Rice | plastid | 65.89 | 68.64 |
| EER99538 | Sorghum | plastid | 64.55 | 67.96 |
| HORVU2Hr1G041260.1 | Barley | mitochondrion, plastid | 63.88 | 66.78 |
| TraesCS2A01G206100.1 | Wheat | mitochondrion, plastid | 63.88 | 66.78 |
| TraesCS2B01G233300.1 | Wheat | plastid | 63.88 | 66.78 |
| Zm00001d006588_P001 | Maize | plastid | 63.21 | 66.55 |
| TraesCS2D01G210000.1 | Wheat | plastid | 63.55 | 66.43 |
| AT2G20890.1 | Thale cress | plastid | 66.56 | 66.33 |
| Solyc07g054820.2.1 | Tomato | plastid | 52.84 | 63.2 |
| Zm00001d021764_P002 | Maize | plastid | 51.17 | 50.66 |
| KRH13607 | Soybean | cytosol | 9.7 | 38.67 |
Protein Annotations
| MapMan:1.1.1.3.10 | EntrezGene:100259646 | wikigene:100259646 | ProteinID:CCB51677 | ProteinID:CCB51677.1 | ncoils:Coil |
| UniProt:F6HHI1 | EMBL:FN595759 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006810 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009527 | GO:GO:0009528 |
| GO:GO:0009532 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 |
| GO:GO:0009628 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010027 | GO:GO:0010182 | GO:GO:0010207 |
| GO:GO:0010319 | GO:GO:0015979 | GO:GO:0015996 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0045037 |
| GO:GO:0045038 | GO:GO:1902458 | GO:GO:1903426 | GO:GO:2000070 | EntrezGene:LOC100259646 | wikigene:LOC100259646 |
| HAMAP:MF_01843 | PFAM:PF11264 | PANTHER:PTHR34793 | PANTHER:PTHR34793:SF5 | TIGRFAMs:TIGR03060 | InterPro:Thf1 |
| UniParc:UPI00021087B2 | ArrayExpress:VIT_12s0057g00020 | EnsemblPlantsGene:VIT_12s0057g00020 | EnsemblPlants:VIT_12s0057g00020.t01 | unigene:Vvi.9124 | RefSeq:XP_002275686 |
| RefSeq:XP_002275686.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:8740143..8744479
Molecular Weight (calculated)
34262.8 Da
IEP (calculated)
8.667
GRAVY (calculated)
-0.370
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVTSLSFS ALGQSSERKV PVPTTRSFAS AFEAFRFRAN FYAVGVRSSS SSSSSRMVVQ CMSSVTDVPT VSETKMNFLK NYKRPIPSIY NTLLQELMVQ
101: QHLMRYKRTY RYDAVFALGF VTVYDQLMDG YPSDEDRDII FQVYIKALRE DPEQYRKDAQ MLEEWARSQT ASSLVEFSSK EGEVEGILKD IAERAGGKGS
201: FSYSRFFAIG LFRLLELANA TEPTILEKLC AAFNISKRSV DRDLDVYRNL LTKLVQAKEL LKEYVDREKK KREERVESQK ANEAITKCLG EYEYTGVFW
101: QHLMRYKRTY RYDAVFALGF VTVYDQLMDG YPSDEDRDII FQVYIKALRE DPEQYRKDAQ MLEEWARSQT ASSLVEFSSK EGEVEGILKD IAERAGGKGS
201: FSYSRFFAIG LFRLLELANA TEPTILEKLC AAFNISKRSV DRDLDVYRNL LTKLVQAKEL LKEYVDREKK KREERVESQK ANEAITKCLG EYEYTGVFW
001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS
Arabidopsis Description
THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.