CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20890.1	KRG91803	AT1G35670.1	19130088
AT2G20890.1	KRH34983	AT1G35670.1	19130088
AT2G20890.1	KRH34984	AT1G35670.1	19130088
AT2G20890.1	KRG91803	AT4G09570.1	19130088
AT2G20890.1	KRH34983	AT4G09570.1	19130088
AT2G20890.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22464	Soybean	nucleus, plastid	45.33	11.45
Zm00001d006588_P001	Maize	plastid	42.67	11.27
Os07t0558500-01	Rice	plastid	42.67	11.15
KRH26888	Soybean	nucleus, plastid	44.0	11.11
TraesCS2D01G210000.1	Wheat	plastid	41.33	10.84
TraesCS2B01G233300.1	Wheat	plastid	41.33	10.84
TraesCS2A01G206100.1	Wheat	mitochondrion, plastid	41.33	10.84
HORVU2Hr1G041260.1	Barley	mitochondrion, plastid	41.33	10.84
EER99538	Sorghum	plastid	40.0	10.56
Solyc07g054820.2.1	Tomato	plastid	34.67	10.4
Zm00001d021764_P002	Maize	plastid	41.33	10.26
KRH56048	Soybean	nucleus, plastid	38.67	9.97
KRH25480	Soybean	nucleus, plastid	38.67	9.97
GSMUA_Achr9P12190_001	Banana	plastid	37.33	9.82
VIT_12s0057g00020.t01	Wine grape	plastid	38.67	9.7
GSMUA_Achr8P03730_001	Banana	plastid	36.0	9.41
AT2G20890.1	Thale cress	plastid	37.33	9.33
PGSC0003DMT400047218	Potato	cytosol, extracellular, plastid	36.0	9.22
CDX81988	Canola	plastid	36.0	9.15
CDY13852	Canola	plastid	36.0	9.12
Bra031147.1-P	Field mustard	plastid	36.0	9.12

Protein Annotations

EMBL:ACUP02009764	EnsemblPlants:KRH13607	EnsemblPlantsGene:GLYMA_15G250600	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	InterPro:Thf1	PANTHER:PTHR34793
PANTHER:PTHR34793:SF5	PFAM:PF11264	ProteinID:KRH13607	ProteinID:KRH13607.1	UniParc:UPI0006EDC344	UniProt:A0A0R0G6E3
MapMan:1.1.1.3.10	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:47865573..47868246

Molecular Weight (calculated)

8841.8 Da

IEP (calculated)

9.817

GRAVY (calculated)

-0.221

Length

75 amino acids

Sequence
(BLAST)

1: MHESWKSGLE FKIQLLLLSF HPKKEKLRRF KGHCIKGWGE GEFSYSRFFA VGLFRLVELE NATEPIILDK ANQFI

Best Arabidopsis Sequence Match ( AT2G20890.1 )
(BLAST)

001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS

Arabidopsis Description

THF1THF1 [Source:UniProtKB/TrEMBL;Acc:A0A178VVV5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.